cluster # 9447

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Oryza sativa
cluster # 9447 cluster # 9447 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9447#0 length = 759 sequences # 5

consensus_9447#1 length = 237 sequences # 1

consensusID : consensus_9447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 759
fasta sequence

                              [ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA--TC-TTACA-CTAATGG-CTATTTT-CA-CATGGC-TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGATTTTGCAAGTTCGGAAAACATTTTACCAGGTCACTGATAGCATGCCGATCATTCAAACTATATAACCTGATGTTTGCATTTTCCAGCTTCAACGAATGCTTGAGG]

[+] EMBL CB618049             [ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA  TC TTACA CTAATGG CTATTTT CA CATGGC TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGATTTTGCAAGTTCGGAAAACATTTTACCAGGTCACTGATAGCATGCCGATCATTCAAACTATATAACCTGATGTTTGCATTTTCCAGCTTCAACGAATGCTTGAGG]
[-] EMBL AU075599             [           ttTTTAGAAAAATCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA  TC TTACA CTAATGG CTATTTT CA CATGGC TTGCATAGAGCGCTA CTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACT                                                                                                                                               ]
[+] EMBL CB637523             [                          AATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAA  TC TTACA CTAATGG CTATTTT CA CATGGC TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTTTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGAT                                                                                                        ]
[-] EMBL AU066237             [                                                      tattTATTTTTAAATTAAANCCTTTACACCTAATGGCCTATTTTCCACCATGGCTTTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGT                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU066268             [                                                                                       TGN CTATTTN CA CATGGC TTGCATAGAGCGCTAGCTCTATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAANTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCTTTATATCCTAT                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_9447#0
ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTCAATTATTTTCAAGTTTATAATAATA
TTATTTAATTAATCTTACACTAATGGCTATTTTCACATGGCTTGCATAGAGCGCTAGCTC
TATCTGGAACTAGTAGTCTTAATACAAAGCTGTGTCTTTGAGCTAAGTTTCTCCCTCAGA
TACTGTTGAGCAATCAGAGCAGATCTATCGGCACTCTGAGTAATTCTGTCGATCCACGCT
TCATTCAACACAAATGAAACCTCCTGGTACTCTATTCCAGCTGCCTCTAGAGTTAAAACC
TCAAGTGCAGGGGCATTCTCCACAACATGTAGAAGAAATTCGACCTGATCTCTTGAACCT
TTATATCCTATGATACGCATGTTCTTCAGGTTATTGTATTCACAGCGTCCAAGTTGTTGC
CTGATAGGATGGTCCTCATGCGATTCATCCAGTATTAATAAATTCATGGAAAAATGGATC
TCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAAAAGAGACAAAAAAATTCGTCTCCACG
ATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGTACCTGAGATGAGAAAACTTCCAAGGT
GTATCTGATAACAACTTAGTCTCTGCATCGTTCCAAGAAAGGTGAAAATTCAGATTTTGC
AAGTTCGGAAAACATTTTACCAGGTCACTGATAGCATGCCGATCATTCAAACTATATAAC
CTGATGTTTGCATTTTCCAGCTTCAACGAATGCTTGAGG

consensusID : consensus_9447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCACATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTTCTA]

[-] EMBL CF317535             [AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTCAATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCACATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTTCTA]




>consensus_9447#1
AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTC
AATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCA
CATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9447#0      ------------------------------------------------------------
consensus_9447#1      AGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                                                                  

consensus_9447#0      -------------------------ACTTTCAAATTCCTTTAGAACCTTCAAATAAACTC 35
consensus_9447#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAATCAAATAAACTC 120
                                                 ***    **  *******   ************

consensus_9447#0      AATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCA 95
consensus_9447#1      AATTATTTTCAAGTTTATAATAATATTATTTAATTAATCTTACACTAATGGCTATTTTCA 180
                      ************************************************************

consensus_9447#0      CATGGCTTGCATAGAGCGCTAGCTCTATCTGGA-ACTAGTAGTCTTAATACAAAGCTGTG 154
consensus_9447#1      CATGGCTTGCATAGAGCGCTAGCTCTATCTGGATACTAGTAGTCTTAATACTTT-CTA-- 237
                      ********************************* *****************    **   

consensus_9447#0      TCTTTGAGCTAAGTTTCTCCCTCAGATACTGTTGAGCAATCAGAGCAGATCTATCGGCAC 214
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      TCTGAGTAATTCTGTCGATCCACGCTTCATTCAACACAAATGAAACCTCCTGGTACTCTA 274
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      TTCCAGCTGCCTCTAGAGTTAAAACCTCAAGTGCAGGGGCATTCTCCACAACATGTAGAA 334
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      GAAATTCGACCTGATCTCTTGAACCTTTATATCCTATGATACGCATGTTCTTCAGGTTAT 394
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      TGTATTCACAGCGTCCAAGTTGTTGCCTGATAGGATGGTCCTCATGCGATTCATCCAGTA 454
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      TTAATAAATTCATGGAAAAATGGATCTCTAACTTCTCAATAAAAGGAGCAGCCCTGAGAA 514
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      AAGAGACAAAAAAATTCGTCTCCACGATCCCAGAATCTGCAAAGTTTTTCAACCGCAAGT 574
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      ACCTGAGATGAGAAAACTTCCAAGGTGTATCTGATAACAACTTAGTCTCTGCATCGTTCC 634
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      AAGAAAGGTGAAAATTCAGATTTTGCAAGTTCGGAAAACATTTTACCAGGTCACTGATAG 694
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      CATGCCGATCATTCAAACTATATAACCTGATGTTTGCATTTTCCAGCTTCAACGAATGCT 754
consensus_9447#1      ------------------------------------------------------------
                                                                                  

consensus_9447#0      TGAGG 759
consensus_9447#1      -----