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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1805 fasta sequence
[GCAAGCAACAGAGCCGAGCCGAGACCTCCTCTTTAGATAAGGAAGCAACAAGCTAAGAAGCAGCATCATTCACTCCACGAGCTAGCAAAAAGGATAGCAATGGTGGAACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAAGACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAGCCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGCAGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTGCAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCGTTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATGGTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGCTCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCCATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATAATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTCAAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAGGCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGCTTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGACCACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGGGCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGGTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTTGTTAGTTTCTTCTACTGAAGGAGGAGTACATTATTGCATACTAGAGCTAA]
[+] EMBL AK099856 [GCAAGCAACAGAGCCGAGCCGAGACCTCCTCTTTAGATAAGGAAGCAACAAGCTAAGAAGCAGCATCATTCACTCCACGAGCTAGCAAAAAGGATAGCAATGGTGGAACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAAGACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAGCCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGCAGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTGCAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCGTTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATGGTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGCTCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCCATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATAATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTCAAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAGGCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGCTTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGACCACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGGGCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGGTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGAAGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCAT ]
[+] EMBL AU070408 [ CAATGGTGGAACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACNCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAA GTCAAGCAAGACAACC ]
[+] EMBL C74440 [ ACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATNAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGANACGAGTNCTGCAAGGTGGAGAGCCGTCATCAGCAGTTCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCTACGCCGGGCACCACCACCACCGnggcc ]
[+] EMBL AK105834 [ AGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAAGACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAGCCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGCAGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTGCAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCGTTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATGGTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGCTCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCCATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATAATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTCAAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAGGCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGCTTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGACCACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGGGCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGGTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTT ]
[+] EMBL AU078675 [ GTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTTGTTAGTTTCTTCTACTGAAGGAGGAGTACATTATTGCATACTAGAGCTAA]
consensusID : consensus_9479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[CNCCGGCCGGTTTAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAANAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGANCTGGACGTCTTCAACCCCACAGCCATTCNCCCTTGCTTTGTCGTCGTCTANAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACNCTTCGTTAATTGCATGTAATCAANCGATCGANCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU076110 [CNCCGGCCGGTTTAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAANAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGANCTGGACGTCTTCAACCCCACAGCCATTCNCCCTTGCTTTGTCGTCGTCTANAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACNCTTCGTTAATTGCATGTAATCAANCGATCGANCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9479#0 GCAAGCAACAGAGCCGAGCCGAGACCTCCTCTTTAGATAAGGAAGCAACAAGCTAAGAAG 60
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 CAGCATCATTCACTCCACGAGCTAGCAAAAAGGATAGCAATGGTGGAACCGGGGAGAGCG 120
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 CGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATG 180
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 AAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAA 240
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAG 300
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTC 360
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 AGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCAC 420
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 CGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAA 480
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAG 540
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 CCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGC 600
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 AGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTG 660
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 CAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCG 720
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 TTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATG 780
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGC 840
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 TCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCC 900
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 ATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATA 960
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 ATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTC 1020
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 AAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAG 1080
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGC 1140
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 TTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGAC 1200
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 CACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGG 1260
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGG 1320
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 TCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGG 1380
consensus_9479#1 -----------------------------------------CNCCGGCCGGTTTAGGAGG 19
* ******** * ******
consensus_9479#0 GAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGG 1440
consensus_9479#1 GAGGAGGCGGCGGCGGCGGCGGCGGAGGAANAGGAGGAGGAGTACGACTCGGTGGCCGGG 79
****************************** *****************************
consensus_9479#0 ACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATT 1500
consensus_9479#1 ACGACGCCGGGGCTGTACTCCAACCTGGACGANCTGGACGTCTTCAACCCCACAGCCATT 139
******************************** ***************************
consensus_9479#0 CTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATA 1560
consensus_9479#1 CNCCCTTGCTTTGTCGTCGTCTANAGGGCCTGATCGATTAGTGATCATTAACCAATAATA 199
* ********************* ************************************
consensus_9479#0 ATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCG 1620
consensus_9479#1 ATAATCTTAGCTAGCATCATTTCCTTCACNCTTCGTTAATTGCATGTAATCAANCGATCG 259
***************************** *********************** ******
consensus_9479#0 ATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATT 1680
consensus_9479#1 ANCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTAAA 319
* ********************************************************
consensus_9479#0 GTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACA 1740
consensus_9479#1 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 345
* * * * * *
consensus_9479#0 ATCAGATAGATGTTTGTTAGTTTCTTCTACTGAAGGAGGAGTACATTATTGCATACTAGA 1800
consensus_9479#1 ------------------------------------------------------------
consensus_9479#0 GCTAA 1805
consensus_9479#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||