cluster # 950

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Oryza sativa
cluster # 950 cluster # 950 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_950#0 length = 437 sequences # 1

consensus_950#1 length = 362 sequences # 1

consensusID : consensus_950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTTGTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCCGGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATAACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC]

[+] EMBL CF313535             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTTGTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCCGGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATAACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC]




>consensus_950#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTT
GTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCC
GGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGA
ATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAA
ACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATA
ACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTT
ATTGGGGGGGGCCCCCC

consensusID : consensus_950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATCCCTCAAAACTTTTTCCCCTTTCCCTTTTTTTGACAAAAACAAAAAAAGGGGGGGGTCCTTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGAATTTTTTTAAACCCGCCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATACCAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGTGGGCCCCCC]

[+] EMBL CF316145             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATCCCTCAAAACTTTTTCCCCTTTCCCTTTTTTTGACAAAAACAAAAAAAGGGGGGGGTCCTTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGAATTTTTTTAAACCCGCCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATACCAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGTGGGCCCCCC]




>consensus_950#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCC
AAAAAAATCCCTCAAAACTTTTTCCCCTTTCCCTTTTTTTGACAAAAACAAAAAAAGGGG
GGGGTCCTTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGAATTTTTTTAAACCCG
CCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAAACAAGGGCAAAACCG
GTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATACCAACCCGAAACATA
AAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGTGGGCCCC
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_950#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_950#1      -----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49
                                *************************************************

consensus_950#0      GGCCTTTGGGGCCTTTTTTGAATTTTAAAAAAAAGGCCCCCCCAACCAGGGGTGGACCTT 120
consensus_950#1      -------------TTTTTTG--CCCCAAAAAAA----TCCCTCAA--------------- 75
                                  *******      *******     *** ***               

consensus_950#0      GTTTTCGGGGTAACCTTTACCCTTACGGTTTTCCGTTTTCCCCCCTAAAAATAGGGCCCC 180
consensus_950#1      -----------AACTTTTTCCCCT------TTCCCTTTTTTTGACAAAAACAAAAAA--- 115
                                *** *** *** *      **** ****     * ****  *       

consensus_950#0      GGGGGGGGGTCCCGGTTCCCAGTTTTTACCCCCTTCACCCCTTTTAAGGGCCCAGGGGGA 240
consensus_950#1      AGGGGGGGGTCC----------TTTTTTCCCCCTTAAACCCTGGTAAGGGCCCAAGGGGA 165
                      ***********          ***** ******* * ****  ********** *****

consensus_950#0      ATTTTTTTAAACCCGCGGGGATTTTCCCCTTTAGGGGGGGTAAATTTGAGCCTGGGGGAA 300
consensus_950#1      ATTTTTTTAAACCCGCCGGAATTATCCCTTTTAGGGGGGGTAAATTTGAACCTGGGGGAA 225
                     **************** ** *** **** ******************** **********

consensus_950#0      ACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATA 360
consensus_950#1      ACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTCCCCCCCCAAATTCCCCCAAAATA 285
                     ************************************************************

consensus_950#0      ACAACCCGGAACCTAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCACCCCCCTTT 420
consensus_950#1      CCAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTT 345
                      ******* *** **************************** ******************

consensus_950#0      ATTGGGGGGGGCCCCCC 437
consensus_950#1      ATTGGGGTGGGCCCCCC 362
                     ******* *********