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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1627 fasta sequence
[AAAAAAGAGAGAAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACGCCGCGGCGGCGGCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACC-TTCGTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACC-ACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATG-TTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCATTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCATCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGG-TCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGC-TTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGACCCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTATCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGATAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACATTGTCTTGGTTATTTCTTTAAAAAAAAAAAA]
[+] EMBL AK066313 [AAAAAAGAGAGAAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACGCCGCGGCGGCGGCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACC TTCGTGCAGCGCGTCAACCACTTCCTCACCTTCGGCGCCTACC ACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATG TTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCATTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCATCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGG TCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGC TTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGACCCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTATCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGATAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACAT ]
[+] EMBL AU078399 [ AAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACNCCGCGGCGGC GNGAAGGACTCGCCGGCGGNGGNGATNGACGTNCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACAGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACCTTTCGTGCAGCGCATCAACCACTTCCTCAACTTCGGCGGCTACCAACAACTTCCTGCG ]
[+] EMBL AK066352 [ TCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACGCCGCGGCGGCGGCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACC TTCGTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACC ACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCATTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCATCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGG TCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTT ]
[+] EMBL AU078400 [ cCACAGTGNCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGGTTCTTTTTGNCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGC TTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGACCCCCCACC AAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTCTCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGATAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACATTGTCTTGGTTATTTCTTTAAAAAAAAAAAA]
[+] EMBL OSC31282 [ TGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGGAATCTGATTGATCTGAAT CTGTTGCAGCTTTTGCACCT ]
consensusID : consensus_9506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[TCCCGCGGACGAGACGACCCCCGCGCGCGGCTTGTGGAGGACTCCCCCGCGGTGGGGATGGACGTGCCCCGGCTGCTGGTGGCGCACGGGTCTGTGACGGCACCTTCCTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACCACCGCCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCCGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTC]
[+] EMBL CB642661 [TCCCGCGGACGAGACGACCCCCGCGCGCGGCTTGTGGAGGACTCCCCCGCGGTGGGGATGGACGTGCCCCGGCTGCTGGTGGCGCACGGGTCTGTGACGGCACCTTCCTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACCACCGCCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCCGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9506#0 AAAAAAGAGAGAAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCA 60
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAG 120
consensus_9506#1 -----------------------------------------------TCCCGCGGACGAG 13
********* ***
consensus_9506#0 ACGACGCC-GCG-GCGGCG-GCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGC 177
consensus_9506#1 ACGACCCCCGCGCGCGGCTTGTGGAGGACTCCCCCGCGGTGGGGATGGACGTGCCCCGGC 73
***** ** *** ***** * ********* ** **** *************** ***
consensus_9506#0 TGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGT 237
consensus_9506#1 TGCTGGTGGCGCACGGGTCTGTGACGG--------------------------------- 100
******************* *******
consensus_9506#0 GGCCCATCTTCGAGGGCACCTTCGTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCT 297
consensus_9506#1 ----------------CACCTTCCTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCT 144
******* ************************************
consensus_9506#0 ACCACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCC 357
consensus_9506#1 ACCACCGCCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCC 204
****** *****************************************************
consensus_9506#0 TCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTG 417
consensus_9506#1 TCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTG 264
************************************************************
consensus_9506#0 CCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGT 477
consensus_9506#1 CCATAATAGGGGTAACATATTTTATAATCGTCCCGACATCTTTCCAGTACATTCCTGGGT 324
********************************* **************************
consensus_9506#0 ACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTAC 537
consensus_9506#1 ACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTAC 384
************************************************************
consensus_9506#0 TCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAAT 597
consensus_9506#1 TCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAAT 444
************************************************************
consensus_9506#0 ATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCA 657
consensus_9506#1 ATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCA 504
************************************************************
consensus_9506#0 AGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGT 717
consensus_9506#1 AGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGT 564
************************************************************
consensus_9506#0 TTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTG 777
consensus_9506#1 TTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTG 624
************************************************************
consensus_9506#0 TGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCA 837
consensus_9506#1 TGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTC--------- 675
***************************************************
consensus_9506#0 TTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCA 897
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATA 957
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 ACACACAGATACTCTTAGCGGTCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTT 1017
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 GTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGC 1077
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 AAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAG 1137
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCG 1197
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 ATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGG 1257
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAAT 1317
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 GCTGTTGCAGCTTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTA 1377
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 GAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCAT 1437
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 CACACAAGGAGACCCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTG 1497
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 CTATCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGA 1557
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 TAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACATTGTCTTGGTTATTTCTTTAA 1617
consensus_9506#1 ------------------------------------------------------------
consensus_9506#0 AAAAAAAAAA 1627
consensus_9506#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||