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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1401 fasta sequence
[TGCTCTCCCTTTAATCCTTAGCCCCAATCAGCGCCATACTGTTGTACTCTCTGTTCCCCTCCTTATATTTTATGCACAGGGCCAATCCACTACGGCATCGGCATGCACAATCTTTTCTTCTTCCTTTCTTTCTCCTCTTCCTTTATATTCCCCCACCTCCATGCTCGCGAGCTTTAGTGAGCACAGTGAATTAAAGCGAAGCGATGTGAAAATATAATTGTGTACATGTGTGTTGATGGATGTGTGCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAGCTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCCACATTACAGGAGATGAGAATGATCCTTTTGGGCTATTTTTTTAATCTCTCTGATCGAGCTGAGTAGGGAAATTAAGATCAT]
[+] EMBL AK100894 [TGCTCTCCCTTTAATCCTTAGCCCCAATCAGCGCCATACTGTTGTACTCTCTGTTCCCCTCCTTATATTTTATGCACAGGGCCAATCCACTACGGCATCGGCATGCACAATCTTTTCTTCTTCCTTTCTTTCTCCTCTTCCTTTATATTCCCCCACCTCCATGCTCGCGAGCTTTAGTGAGCACAGTGAATTAAAGCGAAGCGATGTGAAAATATAATTGTGTACATGTGTGTTGATGGATGTGTGCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAGCTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCC ]
[+] EMBL AK100932 [ GCACAATCTTTTCTTCTTCCTTTCTTTCTCCTCTTCCTTTATATTCCCCCACCTCCATGCTCGCGAGCTTTAGTGAGCACAGTGAATTAAAGCGAAGCGATGTGAAAATATAATTGTGTACATGTGTGTTGATGGATGTGTGCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAGCTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCCACATTACAGGAGATGAGAATGATC ]
[-] EMBL CB684389 [ CGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGGTTAGAACTAATTAATTACATGTTATTTATATC ]
[+] EMBL CB652112 [ GCTCGACCCTTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCAAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACACGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCCTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCCACATTACAGGAGATGAGAATGATCCTTTTGGGCTATTTTTTTAATCTCTCTGATCGAGCTGAGTAGGGAAATTAAGATCAT]
consensusID : consensus_9530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence
[GCCCGCGCTCCCCTTCCGGCGGCGCCTCCGCCTCCTCCCCGCGCGGCGCCGGGGGCTCCGCCGCCGCCGCCGCCGCGGCGACGCCCGGCGCCGTGATACCGGTCAGCTCGGTCAGCTACGAGGTGTTCCTGCTGCT-CCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAGAAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCACTGCGCCGCCGCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGGAGCTCGCCCTCCTCACCC---AGCAGCTGGCAGGCATGGTGGAGAAGGCGTCCATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCACCAAGCACCTCCCCATCGACGTCGTCGCCGAGATCGACGAGCTCCGCCTCAAGTCGATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCA]
[+] EMBL CB684388 [GCCCGCGCTCCCCTTCCGGCGGCGCCTCCGCCTCCTCCCCGCGCGGCGCCGGGGGCTCCGCCGCCGCCGCCGCCGCGGCGACGCCCGGCGCCGTGATACCGGTCAGCTCGGTCAGCTACGAGGTGTTCCTGCTGCT CCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAGAAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCACTGCGCCGCCGCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGGAGCTCGCCCTCCTCACCC AGCAGCTGGCAGGCATGGTGGAGAAGGCGTCCATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCACCAAGCACCTCCCCATCGACGTCGTCGCCGAGATCGACGAGCTCCGCCTCAAGTCGATGTCGCGCCGCTCGCCGTTC ]
[+] EMBL AU090498 [ CTACGAGGTGTTCCTGCTGCTCCCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAGAAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCA TGCGCCGCCGCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCT CTTCGGCGTCGAGGAGCTCGCCCTCCTCACCCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAG TCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9530#0 -----TGCTCTCCCTTTAAT----CCTTAGCC-CCAATCAGCGCCATACTGTTGTACTCT 50
consensus_9530#1 GCCCGCGCTCCCCTTCCGGCGGCGCCTCCGCCTCCTCCCCGCGCGGCGCCGGGGGCTCCG 60
**** ** * *** *** ** * **** * * * *
consensus_9530#0 CTGTTCCCCTCCTTATATTTTATGCACAGGGCCAATCCACTA--CGGCATCGGCATGCAC 108
consensus_9530#1 CCGCCGCCGCCGCCGCGGCG-ACGCCCGGCGCCGTGATACCGGTCAGCTCGGTCAGCTAC 119
* * ** * * ** * * *** ** * ** * ** **
consensus_9530#0 AATCTTTTCTTCTTCCTTTC----TTTCTCCTCTTCCTTTATATTCCCCCACCTCCATG- 163
consensus_9530#1 GAGGTGTTCCTGCTGCTCCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAG 179
* * *** * * ** ** ** * * * * * * * **
consensus_9530#0 ----------CTCG--CGAGCTTTAGTGAGCACAGTGAATTAAA--------GCGAAGC- 202
consensus_9530#1 AAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCACTGCGCCGCC 239
* ** ** *** * **** * * * * *** **
consensus_9530#0 GATGTGAA----------AATATAATTGTGTACATGTGT---------GTTGATGGATGT 243
consensus_9530#1 GCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGGAGCTC 299
* ** * * * * * * * * ** ** *
consensus_9530#0 GTGCAGA------AGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATG 297
consensus_9530#1 GCCCTCCTCACCCAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCCATCGAGGACGTGATG 359
* * ******************************* ***************
consensus_9530#0 AAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCAC 357
consensus_9530#1 AAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCAC 419
************************************************************
consensus_9530#0 CTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTC 417
consensus_9530#1 CTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCACCAAGCACCTCCCCATCGACGTC 479
************************************ ***********************
consensus_9530#0 GTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCG 477
consensus_9530#1 GTCGCCGAGATCGACGAGCTCCGCCTCAAGTCGATGTCGCGCCGCTCGCCGTTCCTCTCG 539
****** ************************* ***************************
consensus_9530#0 CACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAG 537
consensus_9530#1 CACCACCACCA------------------------------------------------- 550
***********
consensus_9530#0 CTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAG 597
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 CTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCAC 657
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 TACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCC 717
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATG 777
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACC 837
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAG 897
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTC 957
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCG 1017
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGT 1077
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTG 1137
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGC 1197
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 AGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGG 1257
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 CCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATA 1317
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 TCCACATTACAGGAGATGAGAATGATCCTTTTGGGCTATTTTTTTAATCTCTCTGATCGA 1377
consensus_9530#1 ------------------------------------------------------------
consensus_9530#0 GCTGAGTAGGGAAATTAAGATCAT 1401
consensus_9530#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||