cluster # 9541

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Oryza sativa
cluster # 9541 cluster # 9541 Sequences # 6 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9541#0 length = 928 sequences # 6
consensusID : consensus_9541#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 928
fasta sequence
                              [TATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT-CGTGGAGGGTTGT-CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG-AGTTGCA-GATC-ACCGTG-TGG-AAGTAG-CCCT-CCGAGGATG-CCAAG-AAGTTGGC-AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT-CCAGGAATGATCGGCTAAGTATTACCCAT-GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG-CAATGCTGGATCTACAAT-AATTGGTCTCGCCCTTNGGGTACTCCCTCCAACCAATATTGCTTGTGTGCTCAATAAAATTCAGATCTCTTGGGAGATATGAGAAGATGTGAAGGATGTCATCCTGAGGCATGAGCGGGTAATCGGAGGCGCTGAGATTGATGA]

[+] EMBL CB665713             [TATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG CAATGCTGGATCTACAAT AATTGGTCTCGCCCT                                                                                                                                 ]
[-] EMBL CB663061             [ ATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG                                                                                                                                                                    ]
[+] EMBL CB663062             [gATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAAACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATC                                                                                                                                                                      ]
[-] EMBL AU092445             [                                                                                                                                    tttTTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCATGGAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGNTGTCACAACCTCAGTTTTATTTGAGATCTGCCAATGCTGGATCTACAATAAATGGGTCTCGCCCTTNGGGTACTCCCTCCAACCAA                                                                                                            ]
[+] EMBL BE229150             [                                                                                                                                                  GCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTTCCGTGGAAGGTTGTCCCCATGCCATGAATCCGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTGAATTTGCA GATC ACCGTGTTGGAAATTAC CCCC CCGAAGANG CCCAGAAATTTGGC CAAATACATGATTANAATGCGAAGAAGGTTGTCCCNCCCCNATAACC  AATC CCA GAANGATCNGCTAATTA TACCCAT GAA AACCTNC AATA TTTGAAA CTGAAGca                                                                                                                                                                                                                      ]
[-] EMBL C27018               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gcc CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGGTCTGATAGTACTTTG AGTTGCAGGATCNNCCTTG TGG AAGTAGCCCCTCCCGAGGATGCCCAAG AAGTTGGCAAAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATTCCCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG CAATGCTGGATCTACAAT AATTGGTCTCGCCCTT TGGTACTCCCTCCAACCAATATTGCTTGTGTGCTCAATAAAATTCAGATCTCTTGGGAGATATGAGAAGATGTGAAGGATGTCATCCTGAGGCATGAGCGGGTAATCGGAGGCGCTGAGATTGATGA]




>consensus_9541#0
TATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTC
ACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTC
TGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATA
TACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACT
TTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTT
TGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCC
TCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAA
ATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATG
TTCGTGGAGGGTTGTCCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGAT
AGTACTTTGAGTTGCAGATCACCGTGTGGAAGTAGCCCTCCGAGGATGCCAAGAAGTTGG
CAAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATTCCAGGA
ATGATCGGCTAAGTATTACCCATGAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGC
TCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTGCAATGCTGGATCTA
CAATAATTGGTCTCGCCCTTNGGGTACTCCCTCCAACCAATATTGCTTGTGTGCTCAATA
AAATTCAGATCTCTTGGGAGATATGAGAAGATGTGAAGGATGTCATCCTGAGGCATGAGC
GGGTAATCGGAGGCGCTGAGATTGATGA
clustalw multiple alignements is not computed in this case