|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2094 fasta sequence
[GAAGAGCGTGGGCATGGACAACTGACCTGAGTGGCCTTGTCAGGGAGAGCCATAGCAGTGGACGTGTCTATCTCCGCCATTGCTTCGTCGACACTGGACGTGCAGACGGCATGGCCATGAGGGCTTTGCACGATGGGTGGTGCCGTGTTGGTGTTATGGGCTGCCACCATGGTTTGAGGCTTTTGATGTTGCTAGATTTTGTGTTTAACGAGGGAGGGAAGAATGTGTTGTTCTTGACACTGTGCTGTGCTTTTAAGGAGCAGAGATTTCAGAAGCTCTTCAGATATCAGAGAACTTCTTTGTAGTAGTAATCAAATGCGCTTTAGACATCTTTTTATCGTTTCTTGCAAGGTCAGTCCCTGCTTTGGTACCCGATCTCGCTTTTGTGCAACATCAAAGTTACACTTACACAGTAAAGCAGGAATCTTTATGGGACCGTTCGTACTGGTCAATTACTCCAGGCTTTGATTAATGGGTTTTAAGTTTTAACCGCAGATTTGGTACAAGTAACAACCTTTATTTACTTTTTATTTCTGCAACTGTGTCTTTTAACATGAAAGAATCCAGCTCCATTCAAAAGTTTAGTTTTTATTTTCCATTGTGGTGCATGGTCACTCAGCCTGCAGTACTGAATTATCAAAATTTTCTTTTGTCATTTCTCTCATGTTAAGTGCATAGTCTATTTTACTTCAACAGGTAGAAAAACTTTTGTGGGTTTGTTTCTAGCTCAAGGAGGAAATTCATGGGTTTGCATCTAGCACATGAGAGAACAATATTGGTCTAACACAAAGCTCCTTTTGTAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG]
[+] EMBL AK102904 [GAAGAGCGTGGGCATGGACAACTGACCTGAGTGGCCTTGTCAGGGAGAGCCATAGCAGTGGACGTGTCTATCTCCGCCATTGCTTCGTCGACACTGGACGTGCAGACGGCATGGCCATGAGGGCTTTGCACGATGGGTGGTGCCGTGTTGGTGTTATGGGCTGCCACCATGGTTTGAGGCTTTTGATGTTGCTAGATTTTGTGTTTAACGAGGGAGGGAAGAATGTGTTGTTCTTGACACTGTGCTGTGCTTTTAAGGAGCAGAGATTTCAGAAGCTCTTCAGATATCAGAGAACTTCTTTGTAGTAGTAATCAAATGCGCTTTAGACATCTTTTTATCGTTTCTTGCAAGGTCAGTCCCTGCTTTGGTACCCGATCTCGCTTTTGTGCAACATCAAAGTTACACTTACACAGTAAAGCAGGAATCTTTATGGGACCGTTCGTACTGGTCAATTACTCCAGGCTTTGATTAATGGGTTTTAAGTTTTAACCGCAGATTTGGTACAAGTAACAACCTTTATTTACTTTTTATTTCTGCAACTGTGTCTTTTAACATGAAAGAATCCAGCTCCATTCAAAAGTTTAGTTTTTATTTTCCATTGTGGTGCATGGTCACTCAGCCTGCAGTACTGAATTATCAAAATTTTCTTTTGTCATTTCTCTCATGTTAAGTGCATAGTCTATTTTACTTCAACAGGTAGAAAAACTTTTGTGGGTTTGTTTCTAGCTCAAGGAGGAAATTCATGGGTTTGCATCTAGCACATGAGAGAACAATATTGGTCTAACACAAAGCTCCTTTTGTAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG]
consensusID : consensus_9624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1816 fasta sequence
[CTCTCTCTCTTTCTCTCTCCAAACCCCACGCACGCCGCGTCGCCGCCTCCTCCTCTCCATCTCCGCTGCTATTATTGCCCGCGCAGACGCAGGCCACCATCCTTCCTCTCGCTCACGCTCGCTGCTATATGGGGGTCCTCCTCATCGCATCGCATCGCATCACCTCGCACGGGCGCGCGCGCCGTGCCGTGCCGCTAGCTCGATCCGCCTCGTACGCCAGCTCGCTCGCTCGCTCCCCCACCCCGCTGCTGCACGGCTGCGCCCGCGCTGTCCCCTGTCCCCCCGCTCGCCGCGGCGATTTATACCCACCACGCCCCCTGCTGCTGCTATAATGCCCATGAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCGTGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACGA]
[+] EMBL AK101247 [CTCTCTCTCTTTCTCTCTCCAAACCCCACGCACGCCGCGTCGCCGCCTCCTCCTCTCCATCTCCGCTGCTATTATTGCCCGCGCAGACGCAGGCCACCATCCTTCCTCTCGCTCACGCTCGCTGCTATATGGGGGTCCTCCTCATCGCATCGCATCGCATCACCTCGCACGGGCGCGCGCGCCGTGCCGTGCCGCTAGCTCGATCCGCCTCGTACGCCAGCTCGCTCGCTCGCTCCCCCACCCCGCTGCTGCACGGCTGCGCCCGCGCTGTCCCCTGTCCCCCCGCTCGCCGCGGCGATTTATACCCACCACGCCCCCTGCTGCTGCTATAATGCCCATGAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCGTGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACGA]
[+] EMBL C74347 [ GCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTNGCTGTCCAAGCTGCGGTTGCAACGGCTGTAGCCTTCCAAGCTGCGGTTGCAACGGCTGCNGCTCGTGCTCATGCGCNCAATGCAAACCCGATTGTGGCTCGTGCTCNACCAATTGCTGTAGCTGCAANCAAAGCTGCAACGGCTGCTGCNGCGAGCAGTTCTGCCGCTGCG ]
[+] EMBL AU172798 [ CGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGNTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAAaaa ]
consensusID : consensus_9624#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1507 fasta sequence
[GAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG]
[+] EMBL AK064043 [GAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG]
consensusID : consensus_9624#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[ACCTATCACGTTAGCTTAACATTGTATATTTGTGGTGGAATTATGTAATATTCCGATATCGCATTTGAAGTTTTGAACATGTGTGCTCAAATTGAGGGACACATGACTGTAGTGAAAGCAAATATAAATGTCTGAGCAATGGACTATACTTTGTATTCATTACTACAAGTTATGTCCTTTTGCAGGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGGTATGTTTTGATCCAATATAGTTTGCTCGCAGGTTCTGAGGGGCAAGAACATTCAAATATCTATAATGTTTTCTGTTGGATTCAACATTCATCACTATTTCCCTCGAAAAAAAAGCATTCGTCACTATTGGAATTGAAAGTCTGAAAGTGCCTCTAGTCCCTTTGTATGTTAAAAGTCAATAAACAAGCA]
[+] EMBL AK062809 [ACCTATCACGTTAGCTTAACATTGTATATTTGTGGTGGAATTATGTAATATTCCGATATCGCATTTGAAGTTTTGAACATGTGTGCTCAAATTGAGGGACACATGACTGTAGTGAAAGCAAATATAAATGTCTGAGCAATGGACTATACTTTGTATTCATTACTACAAGTTATGTCCTTTTGCAGGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGGTATGTTTTGATCCAATATAGTTTGCTCGCAGGTTCTGAGGGGCAAGAACATTCAAATATCTATAATGTTTTCTGTTGGATTCAACATTCATCACTATTTCCCTCGAAAAAAAAGCATTCGTCACTATTGGAATTGAAAGTCTGAAAGTGCCTCTAGTCCCTTTGTATGTTAAAAGTCAATAAACAAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9624#1 ------------------------------------------------------------
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 GAAGAGCGTGGGCATGGACAACTGACCTGAGTGGCCTTGTCAGGGAGAGCCATAGCAGTG 60
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 ------------------------------------------------------------
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 GACGTGTCTATCTCCGCCATTGCTTCGTCGACACTGGACGTGCAGACGGCATGGCCATGA 120
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 ------------------------------------------------------------
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 GGGCTTTGCACGATGGGTGGTGCCGTGTTGGTGTTATGGGCTGCCACCATGGTTTGAGGC 180
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 ------------------------------------------------------------
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 TTTTGATGTTGCTAGATTTTGTGTTTAACGAGGGAGGGAAGAATGTGTTGTTCTTGACAC 240
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 -----------------------CTCTCTCTCTTTCTCTCTCCAAACCCCACGCACGCCG 37
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 TGTGCTGTGCTTTTAAGGAGCAGAGATTTCAGAAGCTCTTCAGATATCAGAGAACTTCTT 300
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 CGTCGCCGCCTCCTCCTCTCCATCTCCGCTGCTATTATTGCCCGCGCAGACGCAGGCCAC 97
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 TGTAGTAGTAATCAAATGCGCTTTAGACATCTTTTTATCGTTTCTTGCAAGGTCAGTCCC 360
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 CATCCTTCCTCTCGCTCACGCTCGC-TGCTATATGGGGGTCCTCCTCATCGCATCGCATC 156
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 TGCTTTGGTACCCGATCTCGCTTTTGTGCAACATCAAAGTTACACTTA-CACAGTAAAGC 419
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 GCATCACCTCGCACGGGCGCGCGCGCCGTGCCGTGCCGCTAGC------TCGATCCGCCT 210
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 AGGAATCTTTATGGGACCGTTCGTACTGGTCAATTACTCCAGGCTTTGATTAATGGGTTT 479
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 CGTACGCCAGCTCGCTCGCTCGCTCCCCCACC--CCGCTGCTGCACGGCTGCGCCCGCG- 267
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 TAAGTTTTAACCGCAGATTTGGTACAAGTAACAACCTTTATTTACTTTTTATTTCTGCAA 539
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 CTGTCCCCTGTCCCCCCGCTCGCCGCGGCGATTTATACCCACCACGCCCCCTGCTGCTGC 327
consensus_9624#2 ------------------------------------------------------------
consensus_9624#0 CTGTGTCTTTTAACATGAAAGAATCCAGCTCCATTCAAAAGTTTAGTTTTTATTTTCCAT 599
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TATAATGCCCATGAGTGAAGGCGGCGAGGGGTGGTTCT--GAGTTGGCCGTTGGCGTGCT 385
consensus_9624#2 ------------GAGTGAAGGCGGCGAGGGGTGGTTCT--GAGTTGGCCGTTGGCGTGCT 46
consensus_9624#0 TGTGGTGCATGGTCACTCAGCCTGCAGTACTGAATTATCAAAATTTTCTTTTGTCATTTC 659
consensus_9624#3 --------------------------------ACCTATC-ACGTTAGC--TTAACATTGT 25
* * ** * ** * *
consensus_9624#1 GCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCC 445
consensus_9624#2 GCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCC 106
consensus_9624#0 TCTCATGTTAAGTGCATAGTCTATTTTACTTCAACAGGTAGAAAAACTTTTGTGGGTTTG 719
consensus_9624#3 ATATTTGT-GGTGGAATTATGTAATATTCCGATATCGCATTTGAAGTTTTGAACATGTGT 84
** * * * *
consensus_9624#1 GAGGTACCCGGACCTGTGCGGCCGGCGGC--GGATGCAGC---TGGAGGTGCAGATCCTG 500
consensus_9624#2 GAGGTACCCGGACCTGTGCGGCCGGCGGC--GGATGCAGC---TGGAGGTGCAGATCCTG 161
consensus_9624#0 TTTCTAGCTCAAGGAGGAAATTCATGGGTTTGCATCTAGCACATGAGAGAACA-ATATTG 778
consensus_9624#3 GCTCAAATTGAGGGACACATGACTGTAGT--GAAAGCAAA-TATAAATGTCTGAGCAATG 141
* * * * * * * * **
consensus_9624#1 AGCCGCGAGATCACGTTCCTCA-AGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGT 559
consensus_9624#2 AGCCGCGAGATCACGTTCCTCA-AGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGT 220
consensus_9624#0 GTCTAACACAAAGCTCCTTTTGTAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGT 838
consensus_9624#3 GACTAT-ACTTTGTATTCATTA--CTACAAGTTATGTCCTTTTGCAGGTTGCTAA----- 193
* * * * ** * *** *** *
consensus_9624#1 TTCTCGTTCTGGATGCATTAAAGAG-------------------------------ATAA 588
consensus_9624#2 TTCTCGTTCTGGATGCATTAAAGAGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAA 280
consensus_9624#0 TTCTCGTTCTGGATGCATTAAAGAG-------------------------------ATAA 867
consensus_9624#3 -TGTCCTCTTACATTACTTGTCAGG-------------------------------ATAA 221
* ** * * ** ** * ****
consensus_9624#1 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 648
consensus_9624#2 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 340
consensus_9624#0 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 927
consensus_9624#3 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 281
************************************************************
consensus_9624#1 CTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCT 708
consensus_9624#2 CTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCT 400
consensus_9624#0 CTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCT 987
consensus_9624#3 CTTGCCGTCTTTTTCGGTGGATCGG---------GTATGTTTTGATCCAATATAGTT--- 329
************************* ** * * * ** ** * **
consensus_9624#1 ACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCT 768
consensus_9624#2 ACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCT 460
consensus_9624#0 ACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCT 1047
consensus_9624#3 -----------TGCTCG--CAGGTTCTGAGGGGCAAGAACATTCAAATAT---------- 366
***** ** ** * * * **** **** * *
consensus_9624#1 CATGCTGCGACGAGCCGTGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCT 828
consensus_9624#2 CATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCT 520
consensus_9624#0 CATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCT 1107
consensus_9624#3 ----CTATAATGTTTTCTGTTG-GATTCAACATTCATCAC-TATTTCCCTCGAAAAAAAA 420
** * * ** ** * *** * ** * * * * ** * *
consensus_9624#1 GTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCT- 887
consensus_9624#2 GTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCT- 579
consensus_9624#0 GTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCT- 1166
consensus_9624#3 GCATTC---GTCACTATTGGAATTGAAAGTCTGA----AAGTGCCTCTAGTCCCTTTGTA 473
* * ** ** * ** ** ** * * *** * ** *** ** *
consensus_9624#1 TGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCG 947
consensus_9624#2 TGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCG 639
consensus_9624#0 TGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCG 1226
consensus_9624#3 TGTTAAAAGTCAATAAACAAGCA------------------------------------- 496
** * ** * * * *
consensus_9624#1 TGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGC 1007
consensus_9624#2 TGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGC 699
consensus_9624#0 TGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGC 1286
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGC 1067
consensus_9624#2 TGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGC 759
consensus_9624#0 TGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGC 1346
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 ACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAAC 1127
consensus_9624#2 ACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAAC 819
consensus_9624#0 ACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAAC 1406
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 GGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAAC 1187
consensus_9624#2 GGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAAC 879
consensus_9624#0 GGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAAC 1466
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 GGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGC 1247
consensus_9624#2 GGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGC 939
consensus_9624#0 GGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGC 1526
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 AAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGC 1307
consensus_9624#2 AAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGC 999
consensus_9624#0 AAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGC 1586
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGC 1367
consensus_9624#2 TGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGC 1059
consensus_9624#0 TGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGC 1646
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAG 1427
consensus_9624#2 TCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAG 1119
consensus_9624#0 TCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAG 1706
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCG 1487
consensus_9624#2 TGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCG 1179
consensus_9624#0 TGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCG 1766
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGC 1547
consensus_9624#2 TGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGC 1239
consensus_9624#0 TGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGC 1826
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAG 1607
consensus_9624#2 TGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAG 1299
consensus_9624#0 TGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAG 1886
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 AATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGC 1667
consensus_9624#2 AATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGC 1359
consensus_9624#0 AATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGC 1946
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGC 1727
consensus_9624#2 TTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGC 1419
consensus_9624#0 TTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGC 2006
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 CTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGAT 1787
consensus_9624#2 CTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGAT 1479
consensus_9624#0 CTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGAT 2066
consensus_9624#3 ------------------------------------------------------------
consensus_9624#1 TTCAAGGATTTTTCATAGCTATGAGACGA 1816
consensus_9624#2 TTCAAGGATTTTTCATAGCTATGAGACG- 1507
consensus_9624#0 TTCAAGGATTTTTCATAGCTATGAGACG- 2094
consensus_9624#3 -----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||