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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1914 fasta sequence
[TGCTATTCTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGCCTGAAAGATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGCCATAAAGGTCTCTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGACTCGATACAACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATACCATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGGTGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTACGCGGCAAAGTTGCTTTGTTACCTATTCCATTANGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGGTCCCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCACACATGATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTC]
[+] EMBL CB668269 [TGCTATTCTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGCCTGAAAGATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGCCATAAAGGTCTCTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGACTCGATACAACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATACCATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGGTGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTACGCGGCAAAGTTGCTTTGTTACCTATTCCATTANGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGGTCCCGTTTGATACCCGATA ]
[+] EMBL AK062299 [ CATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGGTGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTAGGCGGCAAAGTTGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGTTCCCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCACACATGATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTC]
[-] EMBL CB668270 [ ATCCGCCTGGGATCATGTNTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATAGGTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGTTAAGGA ]
consensusID : consensus_9649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 471 fasta sequence
[TCGGCACGAGATGGAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAAAAAAAACATATGAGATGAGATGGCTC]
[+] EMBL AU174780 [TCGGCACGAGATGGAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAAAAAAAA ]
[+] EMBL BF430515 [ GAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTCATATGAGATGAGATGGCTC]
[+] EMBL AU174781 [ ACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9649#0 TGCTATTCTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGG 60
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CCTGAAAGATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGCCATAAAGGTCT 120
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGG 180
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGC 240
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 TACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCT 300
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 AATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGAC 360
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 TCGATACAACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCT 420
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 TAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATAC 480
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACC 540
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 GATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGG 600
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 TGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTACGCGGCAA 660
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 AGTTGCTTTGTTACCTATTCCATTANGAACCGCAGATTTTTTAGTCCATCACATTCACGC 720
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 ATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGGTC 780
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCG 840
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 AGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTA 900
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGG 960
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 TACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTC 1020
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCA 1080
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 GTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTG 1140
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 GGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATC 1200
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 TATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAG 1260
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 CATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAAC 1320
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 ATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAG 1380
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 GCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTC 1440
consensus_9649#1 ------------------------------------------------------------
consensus_9649#0 GTCGTATTTGGTTTGGTATTGCTACCACACATGATTTCGAAAGTCATGATGATATTACTG 1500
consensus_9649#1 -------TCGGCACGAGATGGAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGC 53
* ** * ** * **** * * * * ** * *
consensus_9649#0 AGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTC 1560
consensus_9649#1 TGTGCCGGCGGTGCAAGGCGACGTACGCGCC----GTCGGGCAACACGCGG---CTCTCC 106
* ** * * ** * * ** * * ****** ** * *
consensus_9649#0 TATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATAC 1620
consensus_9649#1 TGCAGGTTCC-----ACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGT 161
* * * * * ** ** *** ** * * * ** **
consensus_9649#0 AGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAAC 1680
consensus_9649#1 ACTACCAGCTTCGCGACGG--CGACCCACCCTACGCCGCCAAGTTCT-ACGACTGCTGCG 218
* * * * * ** * * * * * ** * ** * *
consensus_9649#0 CCGCTGTGGAAGCCTTTACTCGAGGAGGCACCACCGATTTCCACCTCTCCTACGACGACG 1740
consensus_9649#1 GCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACG 278
*** * *** ** * ** *********************************
consensus_9649#0 CCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACC 1800
consensus_9649#1 CCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACC 338
************************************************************
consensus_9649#0 GCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACG 1860
consensus_9649#1 GCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACG 398
************************************************************
consensus_9649#0 CCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTC------ 1914
consensus_9649#1 CCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAAAAAAAACATATGA 458
*********************************************** * *
consensus_9649#0 -------------
consensus_9649#1 GATGAGATGGCTC 471
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||