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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1210 fasta sequence
[AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA-CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATA-TTTGATCATGCCATCGGTACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACTATTATATTAA]
[+] EMBL AK069384 [AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATA TTTGATCATGCCATCGGTA ]
[+] EMBL C73093 [ GTTCTGACAACGGCGTGA NAGACATCACCTGATCTCACCAAGAANATGGCCGCCGGCGAGAGGCCGG GANCCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCG CGTNGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAA TTCTCGTAAAAGTAGAAGCTGCAA CATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTC AANTTGGTGAT AAGTTGTCTCC AACTAG NTTCTGGACA CAGGGGG CTTGCTGA TACGTGG ]
[+] EMBL CA754889 [ TGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCNAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCCAGCTCGGCAACCACCGCGTC ]
[+] EMBL AU184402 [ AGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGAGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATG ]
[+] EMBL CA767241 [ GTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTTGATCATGCCATCGGTACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACTATTATATTAA]
consensusID : consensus_9666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA758612 [GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9666#0 AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACA 60
consensus_9666#1 ------------------------GGCGTGAGCAGACATCACCTGATCTCACCAAGAACA 36
************************************
consensus_9666#0 TGG-CCGCCGGCGAGAGGCCGGCGACCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGC 119
consensus_9666#1 TGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGT 96
*** *** ************** *************** *********** ***** **
consensus_9666#0 GGCGCCGCTGCCCTTAAGTTT-GTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGT 178
consensus_9666#1 GGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNN 156
** * * ** ******** **** * **** *** **** * ** **
consensus_9666#0 TCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGAT 238
consensus_9666#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 216
consensus_9666#0 GATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGAT 298
consensus_9666#1 NNNNNNNNNNNNNNNNNNNN---------------------------------------- 236
consensus_9666#0 CGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACT 358
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 AGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGT 418
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGAC 478
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 AGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGG 538
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGC 598
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGC 658
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 TGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAG 718
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGT 778
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 GTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAA 838
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCT 898
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 GAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAG 958
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 GACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCT 1018
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGC 1078
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 TCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTGATCATGCCATCGGT 1138
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 ACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTA 1198
consensus_9666#1 ------------------------------------------------------------
consensus_9666#0 CTATTATATTAA 1210
consensus_9666#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||