cluster # 9668

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Oryza sativa
cluster # 9668 cluster # 9668 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9668#0 length = 904 sequences # 3

consensus_9668#1 length = 522 sequences # 3

consensusID : consensus_9668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 904
fasta sequence

                              [ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAGGCCGCGCGGCTGCTCAACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCT-ACATAAGGCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTTCATGCCGT]

[+] EMBL AK101770             [ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAGGCCGCGCGGCTGCTCAACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCT ACATAAGGCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGA                                                                                              ]
[-] EMBL CF313687             [                                                                                                                                                                                                                                                                                                                                                                                                            ttTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCTCACATAAGGCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTTTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATTTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTTCATGCCGT]
[+] EMBL AU222523             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTNTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATATACTTCAGTCTTAGCCCTGCAAAAAAAAA                                ]




>consensus_9668#0
ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATC
GGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGAC
CAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCC
ATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTG
GCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCC
AGCGTGCTCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAGGCCGCGCGGCTGCTC
AACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGACTCAATGAGCAAAGCA
GCAGCTGCAGTGGGTAACATCCTACATAAGGCACTACAGGGTTTTGAAAACATTGCACAC
GGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTT
GGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATC
CCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTAAATCAAGCGTCAGCA
AATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCT
TGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTA
TACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCT
ATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTTCATG
CCGT

consensusID : consensus_9668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 522
fasta sequence

                              [CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCAATTTGC-GTTTTGTGATGTGGTGGG-TTTTGTGGGCGCCGAAGTGGGGAATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCCTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGT]

[+] EMBL CF313686             [CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCATTTTGC GTTTTGTGATGTGGTGGG TTTTGTGGGCGCCGCAGTGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCCTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGT]
[+] EMBL C28306               [                                       GAGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCG CAGTNAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCAATTTGCGGTTTTGTGATGTGGTGGGNTTTTTTGGGCGCCGANTTGCGGAA                                                                                                                                       ]
[+] EMBL C28284               [                                        AGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTNACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTAAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCANTTTGC GTTTTGTGATGTGGTGGG TTTTNTGGGCGCCGAAATGGGGAATGTGGTNCTTTGGAGGAGGAAGGAGGTTGCCGntg                                                                                                    ]




>consensus_9668#1
CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCA
GATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAG
CTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAA
TGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCC
TCGGCGGCGGCGCCAGTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATC
GCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCAATTTGCGTTTTGTGATGTGGT
GGGTTTTGTGGGCGCCGAAGTGGGGAATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGG
CTGGTCGCTGGCGGCGGTGGCGGCGTCCTGGGTCCTCTTCTATTGCTTGCCTGGCTACAC
GCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9668#0      ------------------------------------------------------------
consensus_9668#1      CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCA 60
                                                                                  

consensus_9668#0      --------------ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAG 46
consensus_9668#1      GATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAG 120
                                    **********************************************

consensus_9668#0      CTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAA 106
consensus_9668#1      CTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAA 180
                      ************************************************************

consensus_9668#0      TGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCC 166
consensus_9668#1      TGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCC 240
                      ************************************************************

consensus_9668#0      TCGGCGGCGGCGCCATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGT 226
consensus_9668#1      TCGGCGGCGGCGCCA----GTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCG-T 295
                      ***************    *   *    ***  *           ** * *** ** * *

consensus_9668#0      CGCTGGCGGCGGTGGCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGC 286
consensus_9668#1      AGATCGCCTCCCCTGCGG-GCTGTGGTTGCGCGGCT-TCGTTTGCA-ATTTGCGTTTTGT 352
                       * * **  *    **** *  **** * * *  ** * * ****     * *    ** 

consensus_9668#0      TCTCCTTCGTGTCCAGCGTGC-TCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAG 345
consensus_9668#1      GATGTGGTGGGTTTTGTGGGCGCCGAAGTGGGGAATGTGGTGCTGTGGAGGAGGAAGGAG 412
                        *     * **   * * **  *    * * *   ** ** ** *      **    **

consensus_9668#0      GCCGCGCGGCTGCTCAACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGAC 405
consensus_9668#1      GTGGC-CGGCTGGTCGCTGG--CGGCGGTGGCGGCGTCCTGGGTCC---TCTTCTATTGC 466
                      *  ** ****** **    *  *  *     * *   *   * **    * *   *   *

consensus_9668#0      TCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCTACATAAGGCACTACAGGGTTTT 465
consensus_9668#1      TTGCCTGGCTACAC----GCTGCTCTCCTTCGTGTCCAGCGTGCT-CATGATCGTGCTCG 521
                      *      ** *  *    *****  *   *    ***  * *    **  *  * * *  

consensus_9668#0      GAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTG 525
consensus_9668#1      T----------------------------------------------------------- 522
                                                                                  

consensus_9668#0      CTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTT 585
consensus_9668#1      ------------------------------------------------------------
                                                                                  

consensus_9668#0      CTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTA 645
consensus_9668#1      ------------------------------------------------------------
                                                                                  

consensus_9668#0      AATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAG 705
consensus_9668#1      ------------------------------------------------------------
                                                                                  

consensus_9668#0      ATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACA 765
consensus_9668#1      ------------------------------------------------------------
                                                                                  

consensus_9668#0      AAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGC 825
consensus_9668#1      ------------------------------------------------------------
                                                                                  

consensus_9668#0      TCTGTCTGACTGTCTATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 885
consensus_9668#1      ------------------------------------------------------------
                                                                                  

consensus_9668#0      AAAACACTGTTCATGCCGT 904
consensus_9668#1      -------------------