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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 840 fasta sequence
[NNNTTTTTTNTNTTTAGTTNNNAATGTGAAAATTTTGACTTGAACTGAACA-GGGTTCAATGTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT-CCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCA-GTGGCAGTTGAT-TGCATCACTTGTTTGGT-TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCGGATCCTCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTGTTTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATTCCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGACAAGAACAGGAAAAAAGGAGGAGGAGGAGGAGGTGAAAACTGGAAGAGCAATGACAAATAGCAGCAGCAACACAAGAACAGCAGCAACAAATGGGGAGGGGCAAGAGTTTTGGGAGCAAT]
[-] EMBL BE040312 [NNNTTTTTTNTNTTTAGTTNNNAATGTGAAAATTTTGACTTGAACTGAACA GGGTTCAATGTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCA GTGGCAGTTGAT TGCATCACTTGTTTGGT TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAACTTGACCC ]
[-] EMBL BQ906729 [ ttttttAATGTGAAAATTTTGACTTGAACTGAACAGGGGTTCAATGTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGG TACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTGGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAATCCCTCTGCCTATATCACACTTGCCACTTACA CCATGCAATCTTCTCAGGTGGCAGTTGATGTGCATCACTTG TTGGTCTGGAGTTGTATCACTCAAGAACCAAGTGAGTGA ]
[-] EMBL BQ907552 [ tttttttttTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCACTTACACCCATGCA ]
[+] EMBL CB680832 [ TCCTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCAATTACACCCATGCAATCTTCTCA GTGGCAGTTGAT TGCATCACTTGTTTGGT TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCGGATCCTCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTGTTTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATTCCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGACAAGAACAGGAAAAAAGGAGGAGGAGGAGGAGGTGAAAACTGGAAGAGCAATGACAAATAGCAGCAGCAACACAAGAACAGCAGCAACAAATGGGGAGGGGCAAGAGTTTTGGGAGCAAT]
[-] EMBL CA998749 [ CTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCAATTACACCCATGCAATCTTCTCA GTGGCAGTTGAT TGCATCACTTGTTTGGT TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCGGATCATCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTG TTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATTCCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGACAAGAACAGGAGAAGAGGAGGAGGAGGAGGAGGTGAGAACTGAAAGAGCAATGACAAATAGCAGCAGCAACACAAGAA ]
consensusID : consensus_9680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[TTTTTTTTTTTTTTCATCTCACGGCTACAAGGAAAACGAGAGGCAATTTACCGCTAATTTACAAGGGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATAAATCTCTTTGGCCACTCGAAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAAAATTATTCATCTCCTGGAGGGGGTCCTTGCCAATTATTCAATCCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCAGGGGCAGTTGATTGCATCACTTGTTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCTTGTCTCGTCCTCT]
[+] EMBL CA761388 [TTTTTTTTTTTTTTCATCTCACGGCTACAAGGAAAACGAGAGGCAATTTACCGCTAATTTACAAGGGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATAAATCTCTTTGGCCACTCGAAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAAAATTATTCATCTCCTGGAGGGGGTCCTTGCCAATTATTCAATCCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCAGGGGCAGTTGATTGCATCACTTGTTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCTTGTCTCGTCCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9680#0 NNNTTTTTTNTNTTTAGTTNNNAATGTGAAAATTTTGACTTGAACTGAACAGGGTTCAAT 60
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 GTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCT 120
consensus_9680#1 -----------------------------------------------------------T 1
*
consensus_9680#0 TTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTA 180
consensus_9680#1 TTTTTTTTTTTTTCATCTCACGGCTACAAGGAAAACGAGAGGCAATTTACCGCTAATTTA 61
********* ***************** ************************** *****
consensus_9680#0 CAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACA 240
consensus_9680#1 CAAGGGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACA 121
**** *******************************************************
consensus_9680#0 TACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGAT 300
consensus_9680#1 TACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATAAATCTCTTTGGCCACTCGAAAGAT 181
*********************************** ****************** *****
consensus_9680#0 GATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTA 360
consensus_9680#1 GATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTA 241
************************************************************
consensus_9680#0 ATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAATCCTCTGCCTA 420
consensus_9680#1 ATCCTCAAAATTATTCATCTCCTGGAGGGGGTCCTTGCCAATTATTCAATCCTCTGCCTA 301
******* ******************* ********************************
consensus_9680#0 TATCACACTTGCCACTTACACCCATGCAATCTTCTCAGTGGCAGTTGATTGCATCACTTG 480
consensus_9680#1 TATCACACTTGCCACTTACACCCATGCAATCTTCTCAGGGGCAGTTGATTGCATCACTTG 361
************************************** *********************
consensus_9680#0 TTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAG 540
consensus_9680#1 TTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAG 421
************************************************************
consensus_9680#0 CAATTTGACCCCGGATCCTCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTG 600
consensus_9680#1 CAATTTGACCCCTTGTCTCGTCCTCT---------------------------------- 447
************ **
consensus_9680#0 TTTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATT 660
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 CCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGA 720
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 CAAGAACAGGAAAAAAGGAGGAGGAGGAGGAGGTGAAAACTGGAAGAGCAATGACAAATA 780
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 GCAGCAGCAACACAAGAACAGCAGCAACAAATGGGGAGGGGCAAGAGTTTTGGGAGCAAT 840
consensus_9680#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||