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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1571 fasta sequence
[TTTTTTTTTTAATGGATCGAAAACGATTTGATATCTCGAGGTACTGGTACATCGAGATAGATGGGAGCAAATCTCACGGNTTATACTTCAGGTGACATATACTTTACACTGAGGAACGACTTCGATCAAATCAATTACTCATCTGTAGACTACACCAGCTTGGTACTAGGAC-TATACCAAAACCTTACATTGAAA-TGAGTTCAAAATTTGTGTTGTAAGTTGTAACACAAATGAT-ACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATT-GCTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGGCTTCGT-CCGCACCCT-GCCGCCGCCGAGCACGTCCGATCGCAAGAACGGGTTGAGCCTCCCGAGCTTCTTGGACATGCTGTTCATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCG-CCGGCTTCTTCGGCAGCGGCGGCCTACCGGACGGCGGGACTCCTCCTGCGGAGAACGCCACGGATGGGTCTCTCAGGCGCATCTTCATCCGGAGCAGCTCCATCCTGAGCTCGTCGTTCTCGCGCTGCAGCCGGGACACCTCGTCGGGAACGCCCGGCCGGTGCCGGCCGTTGAAGCTCGGCGTCGGCCTGTACGACAGCGCCGGCGACTCGCCGCCGGCGTACGACGGCGCGGCGCTCGGCGGCTGCGATGGCGCGCGGAGGCGCCGCTGCTCGTGGTACAACACCTGCACCACCGTCTGCACCGGCAGGCGGTCGTTCTGCGCCGCGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACCTTCTTCCTCTCGCCCTCGGCCAGACTCGGATGCGCCTTCAAGTAGATGTCAATGGCGCGGTACATGCCGTCCTCGTTGAACCTGGCGCGCTCCGGGATGAGCTCGGCGAGGGCGGTGAACTTGTCAACGGACAGGTTCTCGTCGGAGGCGATCTCGGCGAGGTAGCTATCCATGAGCCTGCCGACCTGGGCGACGTCGCTGTGCGGCGGCGACGCCGCCGAGCTGAAGTCGTCGTCGGTGGTGTAGTCCAGCCGTGGCGGCGGATCCGTGGTGTAGTCCAGGTCGAGGTAGCCGGCCAGGATCCTCTGCACGGCGTCGATGTCGTAGGCCGTTGTGGCGGCGGCGGCGTCGGGCGAGGAGGACGGGATGAGGAGGTCGTCGAGCACGGCCTGGCCGAGCTGCGCCGCCATTCGCTTCTCGAGGTCGAGCCGGCACGCCAGCGTCGTGTCGAGGTGGATCGCGGCGCGGAGCAGCATCGACAGGAAGCTCACCGACAGAGTGTTCCTCTCCCTCGGCAGCAGGCTCACGATCGTCTCGAGCACCACCCGCTTCTCGTGCTCCTGCCTCGCGCCCATCTTCTTCCTGTCCCTCCCGTGCATGTCCAGCCGTCGAAGAGATTTCTGGGCGTAGAGCATGATGAGTAAGGC]
[-] EMBL BM420733 [TTTTTTTTTTAATGGATCGAAAACGATTTGATATCTCGAGGTACTGGTACATCGAGATAGATGGGAGCAAATCTCACGGNTTATACTTCAGGTGACATATACTTTACACTGAGGAACGACTTCGATCAAATCAATTACTCATCTGTAGACTACACCAGCTTGGTACTAGGACGTATACCAAAACCTTACATTGAAAGTGAGTTCAAAATTNGTGTTGTAAGTTGTAACACAAATGATCACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATTNGCTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGG TTCGTACCGCACCCTGGCCGCCGCCGAGCACGTCCGATCGNAAGAACGGGTTGAGCCTCCCGAGCTTCTTGG ]
[-] EMBL BM420577 [ tTTTGTACTAGGAC TATACCAAAACGTTAGATTGAAA TGAGTTCAAAATTTGTGTTGTAAGTTGTAACACAAATGAT ACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCA T GCTACATAGCGATCATGNAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGGCTTCGT CCGCACCCT GCCGCCGCCGAGCACGTCCGATCGCAAGAACGGGTTGAGCCTCCCGAGCTTCTTGGACATGCTGTTCATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCG CCGGCTTCTTCGGCAGCGGCGGCCTACCGGACGGCGGGACTCCTCCTGCGG ]
[+] EMBL CB659303 [ TATACCAAAACCTTACATTGCCC TTAATACAAAATTTGTGTTGTAAGTTGTAACACAAATGAT ACATTTACAAGGTTACATACTAAAATACTACCCCCCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATT GCTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGGTCTGGTTGGTCAAGAAATGGAGTGCCTCCGATCCTTGGGCGGCTTCGT CCGCACCCT GCCGCCGCCGAGCACGTCCGATCGCAAGAACGGGTTGAGCCTCCCGAGCTTCTTGGACATGCTGTTCATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCGCCCGGCTTCTTCGGCAGCGGCGGCCTACCGGACGGCGGGACTCCTCCTGCGGAGAACGCCACGGATGGGTCTCTCAGGCGCATCTTCATCCGGAGCAGCTCCATCCTGAGCTCGTCGTTCTCGCGCTGCAGCCGGGACACCTCGTCGGGAACGCCCGGCCGGTGCCGGCCGTTGAAGCTCGGCGTCGGCCTGTACGACAGCGCCGGCGACTCGCCGCCGGCGTACGACGGCGCGGCGCTCGGCGGCTGCGATGGCGCGCGGAGGCGCCGCTGCTCGTGGTACAACACCTGCACCACCGTCTGCACCGGCAGGCGGTCGTTCTGCGCCGCGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACC ]
[-] EMBL CB659302 [ TTCTGCGCCGCGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACCTTCTTCCTCTCGCCCTCGGCCAGACTCGGATGCGCCTTCAAGTAGATGTCAATGGCGCGGTACATGCCGTCCTCGTTGAACCTGGCGCGCTCCGGGATGAGCTCGGCGAGGGCGGTGAACTTGTCAACGGACAGGTTCTCGTCGGAGGCGATCTCGGCGAGGTAGCTATCCATGAGCCTGCCGACCTGGGCGACGTCGCTGTGCGGCGGCGACGCCGCCGAGCTGAAGTCGTCGTCGGTGGTGTAGTCCAGCCGTGGCGGCGGATCCGTGGTGTAGTCCAGGTCGAGGTAGCCGGCCAGGATCCTCTGCACGGCGTCGATGTCGTAGGCCGTTGTGGCGGCGGCGGCGTCGGGCGAGGAGGACGGGATGAGGAGGTCGTCGAGCACGGCCTGGCCGAGCTGCGCCGCCATTCGCTTCTCGAGGTCGAGCCGGCACGCCAGCGTCGTGTCGAGGTGGATCGCGGCGCGGAGCAGCATCGACAGGAAGCTCACCGACAGAGTGTTCCTCTCCCTCGGCAGCAGGCTCACGATCGTCTCGAGCACCACCCGCTTCTCGTGCTCCTGCCTCGCGCCCATCTTCTTCCTGTCCCTCCCGTGCATGTCCAGCCGTCGAAGAGATTTCTGGGCGTAGAGCATGATGAGTAAGGC]
consensusID : consensus_9790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[TTTTTTTTTTACTAGTGACTATACCAAAACCTTACATTGAAATGAGTTCANAATTTGTGTTTGTCAGTTGTAACACAAATGATACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTATAACTCCATAATATCATGCTTATTTTATTGTTCATTGTACATAGCTGATCATGNNAAATCGAAAAGCACCCATGAAGACACCCAGTCATGCATGATCACTTTTGATCAAGTGTCTTGGTTGGTCAAGCAAATGGAGTGNCTCCGCATCCTTGGTGCTGNGGTTCGTCCTGACCCTGCCTGCCGCCTGAGCACTGTCCTGATCTGCAAGAACTGGGTTTGCAGCCTCCCTGAGCTTCTTTGTGACCATGCTTGTTCATGACATCCTGCCTGCTGCTTCCTGCCTGCCTGCCTGCCGCCCTGGCTTCTTCTGGCAGCTGTGCTGGCTACCTGTGACTGGCTGGGACTCCTCCTTGCTGTGAGAACTGCCCACGGATGGGTCTCTCAGTGCGCATCTTCATCCTGGAGCCAGTCCCATCCTGAGCTCGTCGTACTACGCGCTAGANCG]
[-] EMBL BM038142 [TTTTTTTTTTACTAGTGACTATACCAAAACCTTACATTGAAATGAGTTCANAATTTGTGTTTGTCAGTTGTAACACAAATGATACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTATAACTCCATAATATCATGCTTATTTTATTGTTCATTGTACATAGCTGATCATGNNAAATCGAAAAGCACCCATGAAGACACCCAGTCATGCATGATCACTTTTGATCAAGTGTCTTGGTTGGTCAAGCAAATGGAGTGNCTCCGCATCCTTGGTGCTGNGGTTCGTCCTGACCCTGCCTGCCGCCTGAGCACTGTCCTGATCTGCAAGAACTGGGTTTGCAGCCTCCCTGAGCTTCTTTGTGACCATGCTTGTTCATGACATCCTGCCTGCTGCTTCCTGCCTGCCTGCCTGCCGCCCTGGCTTCTTCTGGCAGCTGTGCTGGCTACCTGTGACTGGCTGGGACTCCTCCTTGCTGTGAGAACTGCCCACGGATGGGTCTCTCAGTGCGCATCTTCATCCTGGAGCCAGTCCCATCCTGAGCTCGTCGTACTACGCGCTAGANCG]
consensusID : consensus_9790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[TTTTACACTGAAAAGATTCGATCAATCATTACTCATCCGGTAGAACTACACCCAGTTTGGTTACTAGGACTATACCAAACTTACATTGAAATGAGTTCCAAATTGTGTGTAAGTTGTAACACAAATGATACATTTACAAGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATTGGTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGTCTGGTTGGTCCAGAAATGGAGTGGCTCCGATCCTTGGGCGGTTCGTCCGACCCTGGCGCGGCGAGCACGTCGATCGCAGAACGGGTTGAGCCTCCCGAG]
[-] EMBL BQ907775 [TTTTACACTGAAAAGATTCGATCAATCATTACTCATCCGGTAGAACTACACCCAGTTTGGTTACTAGGACTATACCAAACTTACATTGAAATGAGTTCCAAATTGTGTGTAAGTTGTAACACAAATGATACATTTACAAGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACTATCATGCTTATTTATGTTCATTGGTACATAGCGATCATGAAAAATCAAAAGCACCATGAAGACACCAGTCATGCATGATCACTTTGATCAAGTCTGGTTGGTCCAGAAATGGAGTGGCTCCGATCCTTGGGCGGTTCGTCCGACCCTGGCGCGGCGAGCACGTCGATCGCAGAACGGGTTGAGCCTCCCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9790#0 TTTTTTTTTTAATGGATCGAAAACGATTTGATATCTCGAGGTACTGGTACATCGAGATAG 60
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 ATGGGAGCAAATCTCACGGNTTATACTTCAGGTGACATATACTTTACACTGAGGAACGAC 120
consensus_9790#2 -----------------------------------------TTTTACACTGAAAAG---A 16
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 TTCGATCAAATCAATTACTCATCTG-TAGA-CTACACC-AGCTTGGT-ACTAG-GACTAT 175
consensus_9790#2 TTCGATCAATC--ATTACTCATCCGGTAGAACTACACCCAGTTTGGTTACTAG-GACTAT 73
consensus_9790#1 --------------------------------------TTTTTTTTTTACTAGTGACTAT 22
** * ***** ******
consensus_9790#0 ACCAAAACCTTACATTGAAATGAGTTCAAAATTTGTGTT-GTAAGTTGTAACACAAATGA 234
consensus_9790#2 ACCAAA--CTTACATTGAAATGAGTTCCAAATT-GTGT--GTAAGTTGTAACACAAATGA 128
consensus_9790#1 ACCAAAACCTTACATTGAAATGAGTTCANAATTTGTGTTTGTCAGTTGTAACACAAATGA 82
****** ******************* **** **** ** *****************
consensus_9790#0 TACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACT 294
consensus_9790#2 TACATTTACAAG-TTACATACTAAAATACTACACACCTGAAATAGTACTACCTCCATACT 187
consensus_9790#1 TACATTTACAAGGTTACATACTAAAATACTACACACCTGAAATAGTA-TAACTCCATAAT 141
************ ********************************** ** ******* *
consensus_9790#0 ATCATGCTTATTTA--TGTTCATTGCTACATAGC-GATCATGAAAAATC-AAAAGCACC- 349
consensus_9790#2 ATCATGCTTATTTA--TGTTCATTGGTACATAGC-GATCATGAAAAATC-AAAAGCACC- 242
consensus_9790#1 ATCATGCTTATTTTATTGTTCATTG-TACATAGCTGATCATGNNAAATCGAAAAGCACCC 200
************* ********* ******** ******* ***** *********
consensus_9790#0 ATGAAGACACC-AGTCATGCATGATCACTTT-GATCAAGG--TCTGGTTGGTCAAG-AAA 404
consensus_9790#2 ATGAAGACACC-AGTCATGCATGATCACTTT-GATCAAG---TCTGGTTGGTCCAG-AAA 296
consensus_9790#1 ATGAAGACACCCAGTCATGCATGATCACTTTTGATCAAGTGTCTTGGTTGGTCAAGCAAA 260
*********** ******************* ******* ********* ** ***
consensus_9790#0 TGGAGTGCCTCCG-ATCCTTGG-GC--GGCTTCGTCCGCACCCTGCC-GCCGCC-GAGCA 458
consensus_9790#2 TGGAGTGGCTCCG-ATCCTTGG-GC--GG-TTCGTCCG-ACCCTGGC-GC-GGC-GAGCA 347
consensus_9790#1 TGGAGTGNCTCCGCATCCTTGGTGCTGNGGTTCGTCCTGACCCTGCCTGCCGCCTGAGCA 320
******* ***** ******** ** * ******* ****** * ** * * *****
consensus_9790#0 C-GTCC-GATC-GCAAGAAC-GGGTTG--AGCCTCCC-GAGCTTCTTGGACATGCTGTTC 511
consensus_9790#2 C-GTC--GATC-GCA-GAAC-GGGTTG--AGCCTCCC-GAG------------------- 379
consensus_9790#1 CTGTCCTGATCTGCAAGAACTGGGTTTGCAGCCTCCCTGAGCTTCTTTGTGACCATGCTT 380
* *** **** *** **** ***** ******** ***
consensus_9790#0 ATGAATCCGCCGCTGCTTCCGCCGCCGCCGCCGCCGGCTTCTTCGGCAGCGGCGGCCTAC 571
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 GTTCATGACATCCTGCCTGCTGCTTCCTGCCTGCCTGCCTGCCGCCCTGGCTTCTTCTGG 440
consensus_9790#0 CGGACGGCGGGACTCCTCCTGCGGAGAACGCCACGGATGGGTCTCTCAGGCGCATCTTCA 631
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 CAGCTGTGCTGGCTACCTGTGACTGGCTGGGACTCCTCCTTGCTGTGAGAACTGCCCACG 500
consensus_9790#0 TCCGGAGCAGCTCCATCCTGAGCTCGTCGTTCTCGCGCTGCAGCCGGGACACCTCGTCGG 691
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 GATGGGTCTCTCAGTGCGCATCTTCATCCTGGAGCCAGTCCCATCCTGAGCTCGTCGTAC 560
consensus_9790#0 GAACGCCCGGCCGGTGCCGGCCGTTGAAGCTCGGCGTCGGCCTGTACGACAGCGCCGGCG 751
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 TACGCGCTAGANCG---------------------------------------------- 574
consensus_9790#0 ACTCGCCGCCGGCGTACGACGGCGCGGCGCTCGGCGGCTGCGATGGCGCGCGGAGGCGCC 811
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 GCTGCTCGTGGTACAACACCTGCACCACCGTCTGCACCGGCAGGCGGTCGTTCTGCGCCG 871
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 CGTGCGCGCACGCCTCGCGCGACAGCTTCTGGCAGTCCATCGCCCTGCACACCTTCTTCC 931
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 TCTCGCCCTCGGCCAGACTCGGATGCGCCTTCAAGTAGATGTCAATGGCGCGGTACATGC 991
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 CGTCCTCGTTGAACCTGGCGCGCTCCGGGATGAGCTCGGCGAGGGCGGTGAACTTGTCAA 1051
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 CGGACAGGTTCTCGTCGGAGGCGATCTCGGCGAGGTAGCTATCCATGAGCCTGCCGACCT 1111
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 GGGCGACGTCGCTGTGCGGCGGCGACGCCGCCGAGCTGAAGTCGTCGTCGGTGGTGTAGT 1171
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 CCAGCCGTGGCGGCGGATCCGTGGTGTAGTCCAGGTCGAGGTAGCCGGCCAGGATCCTCT 1231
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 GCACGGCGTCGATGTCGTAGGCCGTTGTGGCGGCGGCGGCGTCGGGCGAGGAGGACGGGA 1291
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 TGAGGAGGTCGTCGAGCACGGCCTGGCCGAGCTGCGCCGCCATTCGCTTCTCGAGGTCGA 1351
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 GCCGGCACGCCAGCGTCGTGTCGAGGTGGATCGCGGCGCGGAGCAGCATCGACAGGAAGC 1411
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 TCACCGACAGAGTGTTCCTCTCCCTCGGCAGCAGGCTCACGATCGTCTCGAGCACCACCC 1471
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 GCTTCTCGTGCTCCTGCCTCGCGCCCATCTTCTTCCTGTCCCTCCCGTGCATGTCCAGCC 1531
consensus_9790#2 ------------------------------------------------------------
consensus_9790#1 ------------------------------------------------------------
consensus_9790#0 GTCGAAGAGATTTCTGGGCGTAGAGCATGATGAGTAAGGC 1571
consensus_9790#2 ----------------------------------------
consensus_9790#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||