cluster # 9839

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Oryza sativa
cluster # 9839 cluster # 9839 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9839#0 length = 784 sequences # 6

consensus_9839#1 length = 581 sequences # 1

consensusID : consensus_9839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 784
fasta sequence

                              [TTTTTCTTTT--TTTCAATGGAATGTCACAAAGAATTTAATGGATATGTAAAGATCGACAACCTTTATGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTAAATTTCAGTCATCAGCTACATAGGCAC-ATCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCAACAAGAGA-----CAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAA-C-ATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATCGCAGGCAGGGCAAGGAGGGTCATGCTTCTGCCCCTTGGGAGTGGTTCGCTCCAAGCACTCGGCATGGTAGACATGGCAGCAGGGAAGCACACCAGCAACAGGCAGATCTCCAGTACGGACGATTCGGCGGGAGCCCCAGGGCGATCTCTTGGACAAGAGCCTCTCGCAAAGGTCGCACCTTGTTCTATC]

[+] EMBL CA759019             [TTTTTCTTTT  TTTCAATGGAATGTCACAAAGAATTTAATGGATATGTAAAGATCGACAACCTTTATGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGAGGTAAATTTCATTCATCAGCTACATAGGCAC ATCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCCCCCTCTGATACACATCAAGCCTTTTTGCATCCACATCAACAAGAGA     CAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAA C ATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATCGCAGGCAGGGCAAGGAGGGTCATGCTTCTACCCCTTGtctcgcc                                                                                                                                                 ]
[+] EMBL CB618395             [    TCTTTTAATTTTCATGGAATGTCACAAAGAATTTAATGGATCTTTAAAGATCGACAACCTTTATGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTAAATTTCAGTCATCAGCTACATAGGCAC ATCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCAACAAAAGACAATGCAATGCAATGCAATGCAAGCTAAATCGATCATCAGGTTTAGCAAAGCAAA C ATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAAAAAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATCGCAGGCAGGGCAAGGAGGGTCATGCTTCTGCCCCTTGGGAGTGGTTCGCTCCAAGCACTCGGCATGGTAGACATGGCAGCAGGGAAGCACACCAGCAACAGGCAGATCTCCAGTACGGACGATTCGGCGGGAGCCCCAGGGCGATCTCTTGGACAAGAGCCTCTCGCAAAGGTCGCACCTTGTTCTATC]
[-] EMBL BQ908625             [                                             ATGTAAAGATCGACAA CTTTATGAACAAGGTTACAG CCTCATA TTGGTATATAAAATAAGGGGGGTGGGGGGTAAATTTCAGTCATCAGCTACATAGGCAC ATCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTNGCATCCACATCAACAAGAGA     CAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAACC ATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAG GCCAGCCACGCAGTCTCCAGCTTGGGCACAG TCCAGACCCTGGAAGGGCCCTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTG                                                                                                                                                                                                                                      ]
[-] EMBL BM419241             [                                                                                                                        ttttTTTCAGTCATCAGCTACATAGGCACNGTCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCC TTTTGCATCCACATCAACAAGAGA     CAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAA CGATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCCTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGG                                                                                                                                                                                                       ]
[-] EMBL AU173841             [                                                                                                                                                                               ttttTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCAACAAGAGA     CAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAA C ATGCGTTGAGCTAAGCTACAACGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATCGCAGGCA                                                                                                                                                                                      ]
[-] EMBL AU173840             [                                                                                                                                                                                                                                                                                                                                                         GTTCTTGATGATGATGATGTCTCAGCCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGCTCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGGGAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATCGCAGGCAGGGCAAGGAGGGTCATGCTTCTGCCCCTTGGGAGTGGTTCGCTCCAAGCACTCGGCATGGTAGACATGGCAGCAGGGAAGCACACCAGCAACAGGCAGATCTCCAGTACGGACGATTCGGCGGGAGCCCCAGGGCGATCTCTTGGACAAGAGCCTCTCGCAA                    ]




>consensus_9839#0
TTTTTCTTTTTTTCAATGGAATGTCACAAAGAATTTAATGGATATGTAAAGATCGACAAC
CTTTATGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTA
AATTTCAGTCATCAGCTACATAGGCACATCTATGTCATTTCTCCTAGCCGGACCAGTTAA
CTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCA
ACAAGAGACAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAACA
TGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAG
CCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTCTTGTGGCCACTCCGGC
TCAGCAGAGAGATGCTGCTTGCTCTTGGTATCTGGACAGCGCCAGCCACGCAGTCTCCAG
CTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGGGAATC
CGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATCGCAGG
CAGGGCAAGGAGGGTCATGCTTCTGCCCCTTGGGAGTGGTTCGCTCCAAGCACTCGGCAT
GGTAGACATGGCAGCAGGGAAGCACACCAGCAACAGGCAGATCTCCAGTACGGACGATTC
GGCGGGAGCCCCAGGGCGATCTCTTGGACAAGAGCCTCTCGCAAAGGTCGCACCTTGTTC
TATC

consensusID : consensus_9839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [TTTTTTTTTTTGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTAAATTTCAGTCATCAGCTACATAGGCACATCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCAACAAGAGACAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAACATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAATCTTTGCCGGATTCTCCCTTGGAANCAACATGATGCCTCCTTGTNGCCACTCCCGGCTCCACCAAAAAAANTGCTGCTTGCTCCTTGGTATCTGGAAAACGCCCACCANCCATCTTCCACTTNGGCNACTCCAAACCCCNGAAAGGCCTCCCCCANTTAACTTAACCCCNGNANACCTTTTTTTACCCGAANTTAAAAAATGCCGNTTTTTTTTTGCGGAAACCTTNCCNGGGGGGGGAAGGGGTTTTTCCCCCCCCCGGATTTTTTCCCC]

[+] EMBL AA753316             [TTTTTTTTTTTGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTAAATTTCAGTCATCAGCTACATAGGCACATCTATGTCATTTCTCCTAGCCGGACCAGTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCAACAAGAGACAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAACATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAGCCCAATCTTTGCCGGATTCTCCCTTGGAANCAACATGATGCCTCCTTGTNGCCACTCCCGGCTCCACCAAAAAAANTGCTGCTTGCTCCTTGGTATCTGGAAAACGCCCACCANCCATCTTCCACTTNGGCNACTCCAAACCCCNGAAAGGCCTCCCCCANTTAACTTAACCCCNGNANACCTTTTTTTACCCGAANTTAAAAAATGCCGNTTTTTTTTTGCGGAAACCTTNCCNGGGGGGGGAAGGGGTTTTTCCCCCCCCCGGATTTTTTCCCC]




>consensus_9839#1
TTTTTTTTTTTGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGG
GGGTAAATTTCAGTCATCAGCTACATAGGCACATCTATGTCATTTCTCCTAGCCGGACCA
GTTAACTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCA
CATCAACAAGAGACAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGC
AAACATGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGT
CTCAGCCCAATCTTTGCCGGATTCTCCCTTGGAANCAACATGATGCCTCCTTGTNGCCAC
TCCCGGCTCCACCAAAAAAANTGCTGCTTGCTCCTTGGTATCTGGAAAACGCCCACCANC
CATCTTCCACTTNGGCNACTCCAAACCCCNGAAAGGCCTCCCCCANTTAACTTAACCCCN
GNANACCTTTTTTTACCCGAANTTAAAAAATGCCGNTTTTTTTTTGCGGAAACCTTNCCN
GGGGGGGGAAGGGGTTTTTCCCCCCCCCGGATTTTTTCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9839#0      TTTTTCTTTTTTTCAATGGAATGTCACAAAGAATTTAATGGATATGTAAAGATCGACAAC 60
consensus_9839#1      -------------------------------------------------------TTTTT 5
                                                                                  

consensus_9839#0      CTTTATGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTA 120
consensus_9839#1      TTTTTTGAACAAGGTTACAGCCCTCATATTTGGTATATAAAATAAGGGGGGTGGGGGGTA 65
                       *** *******************************************************

consensus_9839#0      AATTTCAGTCATCAGCTACATAGGCACATCTATGTCATTTCTCCTAGCCGGACCAGTTAA 180
consensus_9839#1      AATTTCAGTCATCAGCTACATAGGCACATCTATGTCATTTCTCCTAGCCGGACCAGTTAA 125
                      ************************************************************

consensus_9839#0      CTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCA 240
consensus_9839#1      CTTTAATCCCATGGCAACATCTGCATCTGATACACATCAAGCCTTTTTGCATCCACATCA 185
                      ************************************************************

consensus_9839#0      ACAAGAGACAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAACA 300
consensus_9839#1      ACAAGAGACAATGCAATGCAATGCAAGGTAAATCGATCATCAGGTTTAGCAAAGCAAACA 245
                      ************************************************************

consensus_9839#0      TGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAG 360
consensus_9839#1      TGCGTTGAGCTAAGCTACAATGCTACATGCAGGCAGTTCTTGATGATGATGATGTCTCAG 305
                      ************************************************************

consensus_9839#0      CCCAGTCTTTGCCGGATTCTCCCTTGGAAGCAGCATGATGCCTC-TTGTGGCCACTCC-G 418
consensus_9839#1      CCCAATCTTTGCCGGATTCTCCCTTGGAANCAACATGATGCCTCCTTGTNGCCACTCCCG 365
                      **** ************************ ** *********** **** ******** *

consensus_9839#0      GCTCAGC--AGAGAGATGCTGCTTGCTC-TTGGTATCTGGACAGCGCCAGCCACGCAGTC 475
consensus_9839#1      GCTCCACCAAAAAAANTGCTGCTTGCTCCTTGGTATCTGGAAAACGCCCACCANCCATCT 425
                      ****  *  * * *  ************ ************ * ****  ***  **   

consensus_9839#0      TCCAGCTTGGGCACAGCTCCAGACCCTGGAAGGGCCTTCCCCAAGTGACCTTAGCCTCGG 535
consensus_9839#1      TCCACTTNGG---CNACTCCAAACCCCNGAAAGGCCTCCCCCANTTAAC-TTAACCCCNG 481
                      ****  * **   *  ***** ****  *** ***** *****  * ** *** ** * *

consensus_9839#0      GAATCCGTTTCTTAGCCTGCAGATCGACCACTGCTCGGTGTCTTTGCCGGACAGCCTATC 595
consensus_9839#1      NANACCTTTTTTTACCC--GAANTTAAAAAATGCCGNTTTTTTTTTGCGGAAACCTTNCC 539
                       *  ** *** *** **   *  *  *  * ***    * * ***  **** * * *  *

consensus_9839#0      GCAGGCAGGGCAAGGAGGGTCATGCTTCTGCCCCTTGGGAGTGGTTCGCTCCAAGCACTC 655
consensus_9839#1      NGGGG--GGGGAAGGGG-----TTTTTCCCCCCCCCGGATTTTTTCCCC----------- 581
                         **  *** **** *     *  ***  ****  **   *  * * *           

consensus_9839#0      GGCATGGTAGACATGGCAGCAGGGAAGCACACCAGCAACAGGCAGATCTCCAGTACGGAC 715
consensus_9839#1      ------------------------------------------------------------
                                                                                  

consensus_9839#0      GATTCGGCGGGAGCCCCAGGGCGATCTCTTGGACAAGAGCCTCTCGCAAAGGTCGCACCT 775
consensus_9839#1      ------------------------------------------------------------
                                                                                  

consensus_9839#0      TGTTCTATC 784
consensus_9839#1      ---------