|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence
[GGCCGTACGCGGTGGCGGTGGTGGCGTTCACGTGCCTGCACACGGCGGGGTTCGGGTGGTCGTGGGGCCCGCTGGGGTGGGTGATCCCCGGCGAGATATTCCCGGTGGACATCCGGTCAGCGGGGCAGGCGATGAACGTGTCCATCGGCCTCGACCTCACTTTAATGCATACACAGTCGTTACTAACCATGCTCTGCCGGTTCAAGTACAGCACCTTATCCTACTAGACCGAGTAAGTCTCCTGCATGACACGTTTTTATCGCCCTCTTCCTTTCGGATACTAATGTCGCCCCACTAAATTCCATTGACAACATCTGGCGATGAAACTAGCACCCGAAGCTATTTGCACAGTCTTGGTTGTCGATTACCACTTATTTACCAATTTATCCTATTCCTTTTCATCTACTCCTGTCTTTATATCAATTCCCACTTCTTCCCCTATACCCTTACTCGTTTATTTTCACCTCTCCTATATTTCTCTTCTCTCTTTTTCTCCTCATTTCATTGATAACATCACCTTTCTCATACTTTCCCCCCTCATCTTTTCCTTCAATTTTTCTTTCAGCTTACTTACTACACACTCATCCCTTCATTCCTTATTTTCCACTCACCTACCTTATTAGTTCTTTTTTCCATCTCAAAAATACTTAACTACTTTATCTCACTGACCCCTCCTTACACGATTTACAATCAATGCCGATAACTTCCCCCATCCGTTTTTCTGTTTCCCTATTCACCCCAAGGATTGCCAGCACNTTTAATTTCACCCTTATCTTTTCTATACCCACTCCTTACCCGCGACATTTATTACTATCCTCACTGCCCACATCCACGCAACTTTCGGAATCTCAACGTAAGCATATACTAATTACAA]
[+] EMBL CA756895 [GGCCGTACGCGGTGGCGGTGGTGGCGTTCACGTGCCTGCACACGGCGGGGTTCGGGTGGTCGTGGGGCCCGCTGGGGTGGGTGATCCCCGGCGAGATATTCCCGGTGGACATCCGGTCAGCGGGGCAGGCGATGAACGTGTCCATCGGCCTCGACCTCACTTTAATGCATACACAGTCGTTACTAACCATGCTCTGCCGGTTCAAGTACAGCACCTTATCCTACTAGACCGAGTAAGTCTCCTGCATGACACGTTTTTATCGCCCTCTTCCTTTCGGATACTAATGTCGCCCCACTAAATTCCATTGACAACATCTGGCGATGAAACTAGCACCCGAAGCTATTTGCACAGTCTTGGTTGTCGATTACCACTTATTTACCAATTTATCCTATTCCTTTTCATCTACTCCTGTCTTTATATCAATTCCCACTTCTTCCCCTATACCCTTACTCGTTTATTTTCACCTCTCCTATATTTCTCTTCTCTCTTTTTCTCCTCATTTCATTGATAACATCACCTTTCTCATACTTTCCCCCCTCATCTTTTCCTTCAATTTTTCTTTCAGCTTACTTACTACACACTCATCCCTTCATTCCTTATTTTCCACTCACCTACCTTATTAGTTCTTTTTTCCATCTCAAAAATACTTAACTACTTTATCTCACTGACCCCTCCTTACACGATTTACAATCAATGCCGATAACTTCCCCCATCCGTTTTTCTGTTTCCCTATTCACCCCAAGGATTGCCAGCACNTTTAATTTCACCCTTATCTTTTCTATACCCACTCCTTACCCGCGACATTTATTACTATCCTCACTGCCCACATCCACGCAACTTTCGGAATCTCAACGTAAGCATATACTAATTACAA]
consensusID : consensus_9861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 773 fasta sequence
[TGGACCGGTACGGCCGCCGGGTGCTGTTCCTGACCGGCGGCCTCGTGATGATCGCCTGCCAGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGGCGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGTGGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGTCGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGC-GCCACCTTCGTGCTCA-CGCAGACGTTCCTCG-CCATG-CTGTGCA-GCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGC-GC-GGCACTGGTACTGGCGGCGCTTCGTGCAGCC-GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC-AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC-AAATCCAAAGTCCGTGTTCTATTTTAGTTTCTTAAAAAAAAAACAAGACTTGTCGAGGATGGATTCTAATCAAAAAAAAAA]
[-] EMBL CB647771 [TGGACCGGTACGGCCGCCGGGTGCTGTTCCTGACCGGCGGCCTCGTGATGATCGCCTGCCAGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGGCGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGTGGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGTCGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGC GCCACCTTCGTGCTCA CGCAGACGTTCCTCG CCATG CTGTGCA GCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGC GC GGCACTGGTACTGGCGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AAATCCAAAGTCCGTGTTCTATTTTAGTTTCTT ]
[-] EMBL CB647416 [ CTGACCGGCGGCCTCGTGATGATCGCCTGCCAGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGGCGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGTGGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGTCGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGC GCCACCTTCGTGCTCA CGCAGACGTTCCTCG CCATG CTGTGCA GCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGC GC GGCACTGGTACTGGCGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AAATCCAAAGTCCGTGTTCTATTT ]
[+] EMBL BI813366 [ GCGGGCCAGGGGATCAGCGGTGCCGTCAACCTCGGCTGCCACCTTCGTGCTCATCGCAGACGTTCCTCGTCCATGTCTGTGCACGCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCGGAGACCATAGGGGTGCCGCTCGA GCCATGGGCGCCGTCT GGC GCTGGCACTGGTACTGGCGGCGCTTCGTGCA CC GCCACC GCGGCCAA GACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AAATCCAAAGTCCGTGTTCTATTTTAGTTTCTTACCAAGATTGCAAGACTTGTCGAGGATGGATTCTAATCAAAAAAAAAA]
[+] EMBL BM419046 [ tccagGTCTGGGCAGCAGGCACTGGTACTGGCGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC AACGTATACTGTACGTGTTCTCTGCCTTGACCCTGTGNCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAACAAAATCCAAAGTCCGTNTTCTATTTTAGTTTCTTAAAAAAAAAA ]
[+] EMBL BM419924 [ ccgGTCTGGGC GC GGCACTGGTACTGGCGGCGCTTCGTGCAGCCAGCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGACAAACGTATACTGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AATCC AAGTCCGTGTTCTATTTTAGTTTCTTAAAAAAAAAA ]
[+] EMBL BM421910 [ ccgGGCGCTTCGTGCAGCC GCCACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGAC ACGTATACTGTACGTGTTCTATGCCTTGACCGTGTGGCCNCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAAC AATCC AAGTCCGTNTTCTATTTTAGTTAATTAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9861#0 ------------------------------------------------------------
consensus_9861#1 TGGACCGGTACGGCCGCCGGGTGCTGTTCCTGACCGGCGGCCTCGTGATGATCGCCTGCC 60
consensus_9861#0 ------------------------------------------------------------
consensus_9861#1 AGGTCGCGGTGGCGTGGATCATGGGGTCGCAGATCGGGCGGGACGGCGAGTCGGCGATGG 120
consensus_9861#0 ---GGCCGTACGCGGTGGCGGTGGTGGCGTTCACGTGCCTGCACACGGCGGGGTTCGGGT 57
consensus_9861#1 CGAGGCGCTACTCCGTGGCGGTGTTGGCGCTGACGTGCGTCTTCTCGGCGGCGTTCGGGT 180
*** *** * ********* ***** * ****** * * ****** ********
consensus_9861#0 GGTCGTGGGGCCCGCTGGGGTGGGTGATCCCCGGCGAGATATTCCCGGTGGACATCCGGT 117
consensus_9861#1 GGTCGTGGGGCCCGCTGACGTGGGTGATCCCCGGCGAGATATTCCCGGTGGAGATCCGGT 240
***************** ********************************* *******
consensus_9861#0 CAGCGGGGCAGGCGATGAACGTGTCCATCGGCCTCGACCTCACTTTAATGCATACACAGT 177
consensus_9861#1 CGGCGGGGCAGGGGATCAGCGTGGCCGTCAACCTCGGCGCCACCTTCGTGCTCACGCAGA 300
* ********** *** * **** ** ** ***** * *** ** *** ** ***
consensus_9861#0 CGTTACTAACCATGCTCTGCCGGTTCAAGTACAGCACCTTATCCTACTAGACCGAGTAAG 237
consensus_9861#1 CGTTCCTCGCCATGCTGTGCAGCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGG 360
**** ** ******* *** * ********* *** ** ****** * * * *
consensus_9861#0 TCTCCTGCATGACACGTTTTTATCGCCCTCTTCCTTTCGGATACTAATGTCGCCCCACTA 297
consensus_9861#1 TCGCCGTCATGAC-CGCCTTCGTGTGGGCGTTCCTGCCGGAGACCAAGGGGGTGCCGCTC 419
** ** ****** ** ** * ***** **** ** ** * * ** **
consensus_9861#0 AATTCCATTGACAACATCTGGCGATGAAACTAGCACCCGAAGCTATTTGCACAGTCTTGG 357
consensus_9861#1 GAGGCCATGGGCGCCGTCTGGGCGCGGCACTGGTACTGGCGGCGCTTCGTGCAGCC---G 476
* **** * * * ***** * *** * ** * ** ** * *** * *
consensus_9861#0 TTGTCGATTACCACTTATTTACCAATTTATCCTAT-TCCTTTTCATCTACTCCTGTCT-T 415
consensus_9861#1 CCACCGGCGGCCAAGGAC--GCCATGCTGCCGGAGGTCCTCGTGAACTGACAACGTATAC 534
** *** * *** * * * **** * * ** ** *
consensus_9861#0 TATATCAATTCCCACTTCTTCCCCTATACCCTTACT-CGTTTATTTTC----ACCTCTCC 470
consensus_9861#1 TGTACGTGTTCTCTGCCTTGACCGTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGT 594
* ** *** * * ** * * * ** * ** *** * * *
consensus_9861#0 TATATT---TCTCTTCTCTCTTTTTCTCCTCATTTCATTGAT-AACATCACCTTTCTCAT 526
consensus_9861#1 AAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTGAATACCATCCCGTGTTT 654
* *** *** * *** *** * * *** * * ** * ** * *
consensus_9861#0 ACTTTCCCCCCTCATCTTTTCCTTCAATTTTTCTTTCAGCTTACTTACTACACAC-TCAT 585
consensus_9861#1 GTCCTCTTGCGAAAAATTTGTATT--GTTTACATATGAACAAATCCAAAGTCCGTGTTCT 712
** * * *** ** *** * * * * * * * * *
consensus_9861#0 CCCTTCATTCCTTATTTTCCACTCACCTACCTTATTAGTTCTTTTTTCCATCTCAAAAAT 645
consensus_9861#1 ATTTTAGTTTCTTAAAAAAAAA--ACAAGACTTGTCGAGGATGGATTCTAATCAAAAAAA 770
** ** **** * ** *** * * *** * *****
consensus_9861#0 ACTTAACTACTTTATCTCACTGACCCCTCCTTACACGATTTACAATCAATGCCGATAACT 705
consensus_9861#1 AAA--------------------------------------------------------- 773
*
consensus_9861#0 TCCCCCATCCGTTTTTCTGTTTCCCTATTCACCCCAAGGATTGCCAGCACNTTTAATTTC 765
consensus_9861#1 ------------------------------------------------------------
consensus_9861#0 ACCCTTATCTTTTCTATACCCACTCCTTACCCGCGACATTTATTACTATCCTCACTGCCC 825
consensus_9861#1 ------------------------------------------------------------
consensus_9861#0 ACATCCACGCAACTTTCGGAATCTCAACGTAAGCATATACTAATTACAA 874
consensus_9861#1 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||