cluster # 987

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Oryza sativa
cluster # 987 cluster # 987 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_987#0 length = 428 sequences # 1

consensus_987#1 length = 189 sequences # 1

consensusID : consensus_987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTGTCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTTAACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGTGTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAGGTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCTCTAAAAAA]

[+] EMBL AU173489             [AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTGTCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTTAACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGTGTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAGGTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCTCTAAAAAA]




>consensus_987#0
AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTG
TCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCG
AATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCG
ACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTT
AACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGT
GTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAG
GTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCT
CTAAAAAA

consensusID : consensus_987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [GCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU095383             [GCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_987#1
GCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTAT
TTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_987#0      AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTG 60
consensus_987#1      ------------------------------------------------------------
                                                                                 

consensus_987#0      TCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCG 120
consensus_987#1      ------------------------------GCACCGGGGTGATGGGCATCTTGCTGTGCG 30
                                                   ******************************

consensus_987#0      AATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCG 180
consensus_987#1      AATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCG 90
                     ************************************************************

consensus_987#0      ACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTT 240
consensus_987#1      ACATTGATAATTGAGAAAAATTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 150
                     ********************************      *   **     *   * *    

consensus_987#0      AACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGT 300
consensus_987#1      AAAAAAAAAAAAAAAAAAA----AAAAAAAAAAAAAAAAAAAA----------------- 189
                     ** ****  *  *    *       **   * *   *  ****                 

consensus_987#0      GTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAG 360
consensus_987#1      ------------------------------------------------------------
                                                                                 

consensus_987#0      GTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCT 420
consensus_987#1      ------------------------------------------------------------
                                                                                 

consensus_987#0      CTAAAAAA 428
consensus_987#1      --------