cluster # 9902

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Oryza sativa
cluster # 9902 cluster # 9902 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9902#0 length = 686 sequences # 6

consensus_9902#1 length = 365 sequences # 1

consensusID : consensus_9902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 686
fasta sequence

                              [CACTCTCTTCTCTC-TCGTCTC-GCTCTCTTC-TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG-CAGTGGTGACC-GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC-TCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA-G-CAAGTGGCGTGGCTCACGGGCG-GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGG-CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT-GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTG-TTGATTATGTGATATGTCCTTTTTCTAGATTTTTGATTTAAAAA]

[+] EMBL C74364               [CACTCTCTTCTCTC TCGTNTN GCTCTCTTC TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC TCCCCTCCACCAGATCCGGCCGGANGGGAGGCAGTGGTGCCTCCGCTCCAACAGATCCGGNCGGGAGGGGAGTTAACGACGACAGGAGGGGTGGCANCA G CAAGTGGCGTGGCTNATGGGCG TTGGCGGCna                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU082317             [  CTTTCTTCTCTCTTGGTCTCGGTTCTCTTCTTCTCTCTCCNTCCTTTTTNTCCCGGGCACTACCGACGGTTGGCCGCCGAAAGCGGCCANTGGTGACCGGCGCCTTCCCCTCCGCCAGATCCGGGCCATCCGGT GGA GGGA GCGGCGGCAGGAAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGA GCGGCGGCGACACCCTTCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA G CAAGTGGCGTGGCTCACGGGCG GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGG CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTG TTGATTATGTGATATGTCCTTTTTCTAGATTTTTGATTTAAAAA]
[+] EMBL C73339               [  CTCTCTTCTCTC TCGTCTC GCTCTCTTC TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GNNCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGNGGCCGGACGGNAGGCGGCGGCGACACCC TCCCCTCCACCANATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGNTCCACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK059193             [     TCTTCTCTC TCGTCTC GCTCTCTTC TCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC TCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA G CAAGTGGCGTGGCTCACGGGCG GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGG CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTG TTGATTATGTGATATG                            ]
[+] EMBL CA754217             [                                           TCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGG CAGTGGTGACC GCGCCCTCCCCTCCGCCAGATCCGGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCC TCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACAGGAGGGGTGGCAGCA G CAAGTGGCGTGGCTCACGGGCG GTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGNACCCCCAACCGTCTCCTTCGCTTGGCGGNNTGTG CATTGTTGATGTTTGATTCNATGA TTAATGGATG TTGATGTTTGATTCA CGATGT AACTTGTTGATG ATATTTGATTGTGGGA GCA GAATTTG GTGA TATG GATA                              ]
[+] EMBL BI805736             [                                                                                                                                                                                                                                                                                                                      GGGTNGCAACATGCCAAGTGGCGTGGCTCAC GGCGTGT GCGTCGACGACCTCCCCTCT CCAGATCT GCGGGAGGGGAGGTAATGGCGGC GCGGAGCCCTCCCCTCTGCC AATCCGGCGAGGAGTAGGTA CGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCC ACCGTCTCCTTCGCTTGCCGG CTGTGCCATTGTTGATGTTTGATTCGATGATTTAAT GATGTTTGATGTTTGATTCAGTGATGTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTGTTTGATTAaaaaaaaaa                            ]




>consensus_9902#0
CACTCTCTTCTCTCTCGTCTCGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCACT
ACCGACGGTTGGCCGGCGGAGGCGGCAGTGGTGACCGCGCCCTCCCCTCCGCCAGATCCG
GGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGC
TGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGGA
GGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGACA
GGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCTC
TGCCAGATCTGGCGGGAGGGGAGGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAATC
CGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTGGG
CTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGGCTG
TGCCATTGTTGATGTTTGATTCGATGATTTAATGATGTTTGATGTTTGATTCAGTGATGT
AAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTGTTGATTATGTGATATGTC
CTTTTTCTAGATTTTTGATTTAAAAA

consensusID : consensus_9902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGACAGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGACCCTCCCCTCTGCAAATCCGGCGA]

[+] EMBL C74371               [ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCACTACCGACGGTTGGCCGGCGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGCTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGGAGGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGACAGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCTCTGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGACCCTCCCCTCTGCAAATCCGGCGA]




>consensus_9902#1
ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCACT
ACCGACGGTTGGCCGGCGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAGC
TGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGGA
GGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGACA
GGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCTC
TGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGACCCTCCCCTCTGCAAATCC
GGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9902#0      CACTCTCTTCTCTCTCGTCT-CGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCAC 59
consensus_9902#1      -ACTCTCTTCTCTCTCGTCTGTGCTCTCTTCTCTCTCTCCCTCCCTTCTCTCCCGCGCAC 59
                       *******************  **************************************

consensus_9902#0      TACCGACGGTTGGCCGGCGGAGGCGGCAGTGGTGACCGCGCCCTCCCCTCCGCCAGATCC 119
consensus_9902#1      TACCGACGGTTGGCCGGCGGAGGCGGC--------------------------------- 86
                      ***************************                                 

consensus_9902#0      GGGCCATCCGGTGGGAGGGGAGGCGGCGGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAG 179
consensus_9902#1      ---------------------------GGCAGGGAGCTAGAGGGGAGCCCGTGGCTGCAG 119
                                                 *********************************

consensus_9902#0      CTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGG 239
consensus_9902#1      CTGCCCGGCGGCCGGACGGGAGGCGGCGGCGACACCCTCCCCTCCACCAGATCCGGCCGG 179
                      ************************************************************

consensus_9902#0      AGGGGAGGCAGTGGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTCAACGACGAC 299
consensus_9902#1      AGGGGAGGCAGTNGTGCCTCCGCTCCACCAGATCCGGCCGGGAGGGGAGTNAACGACGAC 239
                      ************ ************************************* *********

consensus_9902#0      AGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCT 359
consensus_9902#1      AGGAGGGGTGGCAGCAGCAAGTGGCGTGGCTCACGGGCGGTGGCGGCGACGACCTCCCCT 299
                      ************************************************************

consensus_9902#0      CTGCCAGATCTGGCGGGAGGGGA-GGTAATGGCGGCGGCGGAGCCCTCCCCTCTGCCAAA 418
consensus_9902#1      CTGCCAGATCTGGCGGGAGGGGAAGGTAATGGCGGCGGCGGA-CCCTCCCCTCTGC-AAA 357
                      *********************** ****************** ************* ***

consensus_9902#0      TCCGGCGAGGAGTAGGTAGCGGCAACGACGGCGGTGGGCTCCCCACGGGCGACAGTGGTG 478
consensus_9902#1      TCCGGCGA---------------------------------------------------- 365
                      ********                                                    

consensus_9902#0      GGCTCCCTTGTCTCTCCTGCCACCAGTGAGCACCCCCAACCGTCTCCTTCGCTTGCCGGC 538
consensus_9902#1      ------------------------------------------------------------
                                                                                  

consensus_9902#0      TGTGCCATTGTTGATGTTTGATTCGATGATTTAATGATGTTTGATGTTTGATTCAGTGAT 598
consensus_9902#1      ------------------------------------------------------------
                                                                                  

consensus_9902#0      GTAAACTTGTTGATGAATATTTGATTGTGTGATGCATGAATTTGTTGATTATGTGATATG 658
consensus_9902#1      ------------------------------------------------------------
                                                                                  

consensus_9902#0      TCCTTTTTCTAGATTTTTGATTTAAAAA 686
consensus_9902#1      ----------------------------