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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1562 fasta sequence
[CGCTTCCGCCGCGGTGTTCTTCCTCCTCTCGCAGGAGAAAATTTCGCTGGTTGAATCGGAGGGAGGCAGCAATGGCCGCTCGAGCTCGGTGGCGAATCCTCGCGCTGCCGCTCGCTCTTCTCCTAGCGGTCGGGTCGTCGCCTGGCCTCGTGAGGCAGGCGTCGTCGTCGGCGGCGGCCAAGCCTCCCGTCCCCAAGGCCATCTCGGACCTGAGGGAGGCGATCGTGAAGGGGCTGGGGTTCCAGTCGGAGGAGCTCAAGGTGTCCGGGTTCGACGTGCGCGACGCGCTCGTGGGGCAGGCGGTGGCGTACGAGTTCGACATCGAGGTCGGGAGGAAGGTGGTGCCGGTGCGCCTGCTCGAGGACGTCAACCGATGGGACTTCGTCGACCTGCCCATCTTCCGGTCCCAGGCCGACGCCGACGACACGGCGCTCGCCGAGATCCGGCGTGGCAAGAGCGGGAAGCGAGCCTTCGACCCGACCCTGCCACCGTTCCAGCTCGCCGGGCCCATGGAGCTCTGGATCCAGGACGGCGACGACGTTAGGCTCGCCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAGATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAATTACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTGCGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA-AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA-TGTC-CGAGAGCGTGCTCA-CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG-CA-GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA-CGGTAAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAACCATTACAGGAAAAAGATTCATCCATAGGCAATTGTATATCTTTTTGAAAAAAA]
[+] EMBL AK070672 [CGCTTCCGCCGCGGTGTTCTTCCTCCTCTCGCAGGAGAAAATTTCGCTGGTTGAATCGGAGGGAGGCAGCAATGGCCGCTCGAGCTCGGTGGCGAATCCTCGCGCTGCCGCTCGCTCTTCTCCTAGCGGTCGGGTCGTCGCCTGGCCTCGTGAGGCAGGCGTCGTCGTCGGCGGCGGCCAAGCCTCCCGTCCCCAAGGCCATCTCGGACCTGAGGGAGGCGATCGTGAAGGGGCTGGGGTTCCAGTCGGAGGAGCTCAAGGTGTCCGGGTTCGACGTGCGCGACGCGCTCGTGGGGCAGGCGGTGGCGTACGAGTTCGACATCGAGGTCGGGAGGAAGGTGGTGCCGGTGCGCCTGCTCGAGGACGTCAACCGATGGGACTTCGTCGACCTGCCCATCTTCCGGTCCCAGGCCGACGCCGACGACACGGCGCTCGCCGAGATCCGGCGTGGCAAGAGCGGGAAGCGAGCCTTCGACCCGACCCTGCCACCGTTCCAGCTCGCCGGGCCCATGGAGCTCTGGATCCAGGACGGCGACGACGTTAGGCTCGCCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAGATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAATTACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTGCGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA TGTC CGAGAGCGTGCTCA CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG CA GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA CGGTAAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAA ]
[+] EMBL CB652083 [ CCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAGATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAATTACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTGCGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTG ]
[-] EMBL CB652084 [ CGAACCAGAAGCCGCTGCTCTCCCTCCGCATCGAAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCAAACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACGATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA TGTC CGAGAGCGTGCTCA CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG CA GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA CGGTAAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCT ]
[+] EMBL BQ907278 [ TGGTGATTGATCACACGCAGCTGGATTGT GCCCCTTCTGTCACTGAATGGGTCAGAT GCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTT CGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCA AGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCA TGTC AGAGAGCGTGCTCA CCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAG CA GTTGAAGCTCCGGTTTTAAGTGAGCTGATCA CGGTAGATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAACCATTACAGGAAAAA ]
[+] EMBL BQ907352 [ GTCCNACTTCCCGGAGTGGAAGACGAAGCCCACAGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCACTGTCACGAGAGCGTGCTCACCCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACTCTTTGAGAGCCACGTTGAAGCTCCGGTTTTAAGTGAGCTGATCACCGGTAGATGACCAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCCAACTGAATAATGAATGAACGAACCNTTACAGGAAAAA ]
[+] EMBL BQ906844 [ ccgATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAATGAACGAACCATTACAGGAAAAGGATTCATCCATAGGCAATTGTATATCTTTTTGAAAAAAA]
consensusID : consensus_9908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[TGTGCCTTTGCATGAGGTAATGCACATCAGGTTANGATTCTGCCTNGTCTGAAAAGCCAGTGAAGGGACTTCAACTTGAGCGCGACCTCTCCCCAACGTACGTCAAGTGGGTTTCCGTGAGAAGAGATGCTGACGGAGAGTGAACTGTCCAACTTCCCGGAGTGGAAGACGAANCCCAAGAAGTTGAGGCCACTACGAGGTTCTTGCTCGTGTGGAGGGTGCAGCGATCCCTGAAAGGATCGCCAGTCACCTTTGAGCCGACGAGCCATGTCAGAGAGCGTGCTCACCGGAATCGATTCNAAACGGAGTGTCACCCCCCGGTTATTCACTCTGAGACATGAACTCCGTTTAAGTGACTGATCACGTAATACACGCGAATTTCTGCGCGATATATACCATACATGAAAATGTGTCGGGTAGTACTGCCACTTGTAATCCACGAATGAAGACAACATCAGAAGATCACCATAGC]
[+] EMBL BI806344 [TGTGCCTTTGCATGAGGTAATGCACATCAGGTTANGATTCTGCCTNGTCTGAAAAGCCAGTGAAGGGACTTCAACTTGAGCGCGACCTCTCCCCAACGTACGTCAAGTGGGTTTCCGTGAGAAGAGATGCTGACGGAGAGTGAACTGTCCAACTTCCCGGAGTGGAAGACGAANCCCAAGAAGTTGAGGCCACTACGAGGTTCTTGCTCGTGTGGAGGGTGCAGCGATCCCTGAAAGGATCGCCAGTCACCTTTGAGCCGACGAGCCATGTCAGAGAGCGTGCTCACCGGAATCGATTCNAAACGGAGTGTCACCCCCCGGTTATTCACTCTGAGACATGAACTCCGTTTAAGTGACTGATCACGTAATACACGCGAATTTCTGCGCGATATATACCATACATGAAAATGTGTCGGGTAGTACTGCCACTTGTAATCCACGAATGAAGACAACATCAGAAGATCACCATAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9908#0 CGCTTCCGCCGCGGTGTTCTTCCTCCTCTCGCAGGAGAAAATTTCGCTGGTTGAATCGGA 60
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 GGGAGGCAGCAATGGCCGCTCGAGCTCGGTGGCGAATCCTCGCGCTGCCGCTCGCTCTTC 120
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 TCCTAGCGGTCGGGTCGTCGCCTGGCCTCGTGAGGCAGGCGTCGTCGTCGGCGGCGGCCA 180
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 AGCCTCCCGTCCCCAAGGCCATCTCGGACCTGAGGGAGGCGATCGTGAAGGGGCTGGGGT 240
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 TCCAGTCGGAGGAGCTCAAGGTGTCCGGGTTCGACGTGCGCGACGCGCTCGTGGGGCAGG 300
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 CGGTGGCGTACGAGTTCGACATCGAGGTCGGGAGGAAGGTGGTGCCGGTGCGCCTGCTCG 360
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 AGGACGTCAACCGATGGGACTTCGTCGACCTGCCCATCTTCCGGTCCCAGGCCGACGCCG 420
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 ACGACACGGCGCTCGCCGAGATCCGGCGTGGCAAGAGCGGGAAGCGAGCCTTCGACCCGA 480
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 CCCTGCCACCGTTCCAGCTCGCCGGGCCCATGGAGCTCTGGATCCAGGACGGCGACGACG 540
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 TTAGGCTCGCCTTGCCGCATGATGTGGAAGCAGGGACGCTGAAGAAAGTAGTGCTATCAG 600
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 ATGGTGCCGTGGTAACAGTGAAGGGTGCCAAGGCTGTGAGCCTCCGGTTGCCACTTGAAT 660
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 TACCGCTCCCTCTCAACCGCACCACTTACAAGGGCCGGTTGTCAAGCTTGATATCCATTG 720
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 CGCAAACGCTACGGGGCGCCGCCCGGTCGAACCAGAAGCCGCTGCTCTCCCTCCGCATCG 780
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 AAGGTCCGACGTCGTTGTCCTCGACTCCTTCCATGTCTCCCAATGACAGGCTCAAGCTCA 840
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 AACGGTTGGCCCCAGGCCAAGTGGAGCTCTCCTCGCGTGCAATCCCTGCTGTTACAGACG 900
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 ATGATGGTGATGGATCACACGCAGCTGGATTGTGGCCCCTTCTGTCACTGAATGGGTCAG 960
consensus_9908#1 ------------------------------------------------------------
consensus_9908#0 ATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGCAGGTG 1020
consensus_9908#1 -TGTGCCTTTGCATGAGGTAATGCACAT-CAGGTTANGATTCTGCCTNGTCTGAAAAGCC 58
** **** * * * * * * * ** * **** * * *
consensus_9908#0 AGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGG 1080
consensus_9908#1 AGTGAAGGGACTTCAACTTG-----AGCGCGACCTCT--CCCCAACGTACGTCAAGT--G 109
** ** ***** ** ****** ** *** ************* *
consensus_9908#0 GGTTTGCGGTGGAGAAGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGT 1140
consensus_9908#1 GGTTTCCGT--GAGAAGAGA--TGCTGACGGAGAG-TGAACTG-TCCAACTTCCCGGAGT 163
***** ** ******** ************* ******* ****************
consensus_9908#0 GGAAGACGAAGCCCAAGAAGTTGAGGGCGCACTACGAGGTTCTTGCTCGTGTGGAGGGTG 1200
consensus_9908#1 GGAAGACGAANCCCAAGAAGTTGAGGC--CACTACGAGGTTCTTGCTCGTGTGGAGGGTG 221
********** *************** *******************************
consensus_9908#0 GCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGCCATGT 1260
consensus_9908#1 C---AGCGATCCCTGAAAGGATCGC-CAGTCAC----CTTTGAG-CCGACGAG-CCATGT 271
******************** *** * ****** ******** ******
consensus_9908#0 CCGAGAGCGTGCTCACCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGC 1320
consensus_9908#1 CAGAGAGCGTGCTCACCGGAA-----TCGAT-TCNAA-ACGGAG------TGTCACCCCC 318
* ***************** * ***** ** ** ****** ** ** *
consensus_9908#0 CGGTTTACTTCACTCTTTGAGAGCAGTTGAAGCTCCGGTTTTAAGTGAGCTGATCACGGT 1380
consensus_9908#1 CGGTTA--TTCACTCTGAGACA-----TGAA-CTCCG--TTTAAGTGA-CTGATCACG-- 365
***** ******** ** * **** ***** ********* *********
consensus_9908#0 AAATGACAAGCGGCGAAAGTTTCTTGGCGGCGAGTATTATTAACTGCATTAGCATGAAAA 1440
consensus_9908#1 ---TAATACACG-CGAA--TTTCTGCGCGATATATACCAT-----------ACATGAAAA 408
* * * ** **** ***** *** ** ** ********
consensus_9908#0 ATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGTAAATTACCAAACTGAATAATGAA 1500
consensus_9908#1 -----TGTGTCGGGTA----GTACTG-CCA--CTTGTAATCCACGAA--TGAAGACAACA 454
*** ***** ***** *** ****** ** ** **** * *
consensus_9908#0 TGAACGAACCATTACAGGAAAAAGATTCATCCATAGGCAATTGTATATCTTTTTGAAAAA 1560
consensus_9908#1 TCAGAAGATCACCATAGC------------------------------------------ 472
* * * ** * **
consensus_9908#0 AA 1562
consensus_9908#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||