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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence
[AGNACAAGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTTCAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTGGACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCCAGAATATGCAATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTCTTACAAGCCATGCTCCTCGAGACCGGATGCTGAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGNTAATGACGTGTCAATTACAGAGCTTGNACCAAGATAAGGNAACCAATTCCTTTGAATTTAAGATAAGAAAATCAATGNCAACGGTAATCGATTTGGTACCTTTCANAACAAACTTCANGGAGAAGGCATAACTTGGAGGAAAAGCATTGAATTCTGAGNGCATTCTNCATTGGCTGAGTCANANTTGGGTGGTTTTGTTGGTCGAC]
[+] EMBL CA764186 [AGNACAAGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTTCAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTGGACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCCAGAATATGCAATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTCTTACAAGCCATGCTCCTCGAGACCGGATGCTGAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGNTAATGACGTGTCAATTACAGAGCTTGNACCAAGATAAGGNAACCAATTCCTTTGAATTTAAGATAAGAAAATCAATGNCAACGGTAATCGATTTGGTACCTTTCANAACAAACTTCANGGAGAAGGCATAACTTGGAGGAAAAGCATTGAATTCTGAGNGCATTCTNCATTGGCTGAGTCANANTTGGGTGGTTTTGTTGGTCGAC]
consensusID : consensus_9960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 798 fasta sequence
[AAGTCACAAGCCGTGTGGTAGGAACATATGGATATATGGCACCAGAGTACGCGATGCGTGGCCACTATTCTGTAAAATCAGACGTCTTTAGCTTTGGCATATTGATGATAGAAATTGTGACAGGAAGAAGAAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTCCTAAGCCGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAA-GATAACCCAGCAGATAGA-CCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCAC-AGTGTCTC-TTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT-GGTTTTGTTTGTTCGTACAA-AAAAAAAAAGTTTATTTTATAGGTTTGAAAATTGGGTTGGTTGCACATCCGGTTACAAAAATTTTTGTAGAAGCTATACACNCAAAAAAAAAAA]
[+] EMBL OSSS25828 [AAGTCACAAGCCGTGTGGTAGGAACATATGGATATATGGCACCAGAGTACGCGATGCGTGGCCACTATTCTGTAAAATCAGACGTCTTTAGCTTTGGCATATTGATGATAGAAATTGTGACAGGAAGAAGAAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTCCTAAGCCGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGGATAACCCAGCAGATCGANCCTATGGTGTCAACAGTGAATATCATGCTTAGCAGCANCACAAGTGTCTCTTTCAATCCCCATCCAAGgc ]
[+] EMBL CB000259 [ CCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAA GATAACCCAGCAGATAGA CCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCAC AGTGTCTC TTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT GGTTTTGTTTGTTCGTACAA AAAAAAAAA ]
[+] EMBL CB000072 [ CCATGGGAACAATTTTGGAGATGATGGATCCCCCTTTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAA GATAACCCAGCAGATAGA CCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCAC AGTGTCTC TTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT GGTTTTGTTTGTTCGTACAA AAAAAAAAA ]
[+] EMBL OSR3365A [ TCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGG GGNGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTTGGGTTTTGTTTGTTCGGACAA GCCACCCTTGTTTATTTTATAGGTTTGAAAATTGGGTTGGTTGCACATCCGGTTACAAAAATTTTT ]
[+] EMBL AU173497 [ CATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT GGTTTTGTTTGTTCGTACAAGCCCACCCTTGTTTATTTTATA GTTTGAAAATT GGTTGGTTGCACATCCAGTGACAAAAATTTATGTAGAAGCTATACACNCAAAAAAAAAAA]
consensusID : consensus_9960#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[TTGGCCAGGGCTATTTGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCAGGAATATGCAATGCGTGGGCACTTTTCTGTAAAGTCAGATGTCCTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTTTTACAAGCCATGCTCCTCGAGACCAGATGGTGAAGTGTATTCACATTGGGGTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTTTTCAATTTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTTGGAATCACACCCCCTAACTTTCCAATTGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCGGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCTATTCCTTTGAATTTAAGATAAGAAAATCAATGGCAACGGTTATCGATTTGTTACCTTTTAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCCTTGAAAAAAAAAAAAA]
[-] EMBL CA763088 [TTGGCCAGGGCTATTTGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCAGGAATATGCAATGCGTGGGCACTTTTCTGTAAAGTCAGATGTCCTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTTTTACAAGCCATGCTCCTCGAGACCAGATGGTGAAGTGTATTCACATTGGGGTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTTTTCAATTTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTTGGAATCACACCCCCTAACTTTCCAATTGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCGGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCTATTCCTTTGAATTTAAGATAAGAAAATCAATGGCAACGGTTATCGATTTGTTACCTTTTAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCCTTGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9960#0 AGNACAAGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTT 60
consensus_9960#2 ------------------------------------------------------------
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTG 120
consensus_9960#2 ------------------------------------------------------------
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 GACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGAT 180
consensus_9960#2 -----------------------------------TTGGCCAGGGCTATTTGGGG-TGAT 24
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCCAGAATAT 240
consensus_9960#2 CAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCAGGAATAT 84
consensus_9960#1 ----------AAGTCACAAGCCGTGTGGTAGGAACATATGGATATATGGCACCAGAGTAC 50
* **** ******* ** ******** *********** * ** **
consensus_9960#0 GCAATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATAATA 300
consensus_9960#2 GCAATGCGTGGGCACTTTTCTGTAAAGTCAGATGTCCTTAGCTTTGGCATATTGATAATA 144
consensus_9960#1 GCGATGCGTGGCCACTATTCTGTAAAATCAGACGTCTTTAGCTTTGGCATATTGATGATA 110
** ******** **** ********* ***** *** ******************* ***
consensus_9960#0 GAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTC 360
consensus_9960#2 GAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTC 204
consensus_9960#1 GAAATTGTGACAGGAAGAAGAAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTC 170
***************** *************** *************** * ******
consensus_9960#0 CTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCT 420
consensus_9960#2 CTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCT 264
consensus_9960#1 CTAAGCC--GTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCT 228
***** * *********************************************** ***
consensus_9960#0 CTTACAAGCCATGCTCCTCGAGACCGGATGCTGAAGTGTATTCACATTGGGCTACTGTGT 480
consensus_9960#2 TTTACAAGCCATGCTCCTCGAGACCAGATGGTGAAGTGTATTCACATTGGGGTACTGTGT 324
consensus_9960#1 CTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGT 288
************************ **** * ****************** ********
consensus_9960#0 GTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGC 540
consensus_9960#2 GTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGC 384
consensus_9960#1 GTTCAAGATAACCCAGCAGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGC 348
***************** ******************************************
consensus_9960#0 AGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACA 600
consensus_9960#2 AGCACAGTGTCTTTTCAATTTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACA 444
consensus_9960#1 AGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACA 408
************ ****** ****************************** *********
consensus_9960#0 GACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGT 660
consensus_9960#2 GACTCAAATATATACTTGGAATCACACCCCCTAACTTTCCAATTGACTGCCTCGACCGGT 504
consensus_9960#1 GACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGT 468
**************** ************ ******* ***** ****************
consensus_9960#0 AGGTCGGGAGGGATGTCAGNTAATGACGTGTCAATTACAGAGCTTGNACCAAGATAAGGN 720
consensus_9960#2 AGGTCGGGAGGGATGTCGGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGA 564
consensus_9960#1 AGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGA 528
***************** * ****** ******************* ************
consensus_9960#0 AACCAATTCCTTTGAATTTAAGATAAGAAAATCAATGNCAACGGTAATCGATTTGGTACC 780
consensus_9960#2 AACCTATTCCTTTGAATTTAAGATAAGAAAATCAATGGCAACGGTTATCGATTTGTTACC 624
consensus_9960#1 AACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACT 588
**** * ***** ********************* ** ******* ** ** *** ***
consensus_9960#0 TTTCANAA-CAAACTTCANGGAGAAGGC-ATAA-CTTGGAGGAAAAGCATTGAATTCTGA 837
consensus_9960#2 TTTTAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCCTTGAAAAAAAA 684
consensus_9960#1 TTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGA 648
*** * ** ********* ********* **** **** **** **** ***** *
consensus_9960#0 GNGCATT-CTNCATTGGCTGAGTCANANTT--GGGTGGTTTTGTTGGTCGAC-------- 886
consensus_9960#2 AAAAA------------------------------------------------------- 689
consensus_9960#1 GTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTTGGTTTTGTTTGTTCGTACAAAAAA 708
*
consensus_9960#0 ------------------------------------------------------------
consensus_9960#2 ------------------------------------------------------------
consensus_9960#1 AAAAAGTTTATTTTATAGGTTTGAAAATTGGGTTGGTTGCACATCCGGTTACAAAAATTT 768
consensus_9960#0 ------------------------------
consensus_9960#2 ------------------------------
consensus_9960#1 TTGTAGAAGCTATACACNCAAAAAAAAAAA 798
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||