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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1191 fasta sequence
[GGGTGCTGAACGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA-CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA-GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT-CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTTTTTTTTGACATATGACAAGTTAAATGTATATGGTTAAAAGAGTTATAAAAATATTTCGTCTAAAGTGAA]
[+] EMBL AB110181 [GGGTGCTGAACGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATAC ]
[+] EMBL AK105776 [ CGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTTTTTTTTGACATATGACAAGTTAAATGTATATGGTTAAAAGAGTTATAAAAATATTTCGTCTAAAGTGAA]
[+] EMBL BP184620 [ AGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGAGGAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAACAATGGAACTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCCACAGGTTNCCCGGTGTGGG ]
[+] EMBL AK068201 [ GTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCACCGCCGCCGGCGA CGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCGGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAAAGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTATTGGTGCTGA GAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCATTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTT CCCGGTGTGGGTGGGGAAGGAGAAGGCGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACGTGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCATATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCATCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAATAACAAGGAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGATACGTCAG ]
[+] EMBL C72581 [ CTACGCCAAGCGCGTGCTGCTCACCGCCGCCGG GAGCGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCCGATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCG GGTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGGCGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGGTGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGTTCAAGAAG CAATGAAAGCGAATGTAAT ACAACTTGGTTTCTAGTAAAGGCAATT CAAAGCGACTNCGGGACTTAGAATCCAGTTTTTGAGGGTCTNTTGTATTCTTAAC ]
consensusID : consensus_9972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[CAAATATATGTTGTTCTTGAGAAAAGAGCCTCCAATCCTCCATAAACAGCACTTCCGGTTCAATCAACAACTGATTCTGTTTGTGTTGAATTCGAGCACCACTCANATCAAGAGGTAAACGTTTGTTGTTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAATAACCGGCTGACAACTCCAGCAGTTCTGAACTGAAGAAATATCTCAGCTGGCCATATTTATGCTTTTCTTCATAAACATGCTTGAATCAGCATAACTCTGTAGACGATACTTGCATTGCAGTTAACAATTGATTCGATCCATGTTGATCTCGAAATATAACACTCATAACTGTAAGAGGTACTAAATGTTTGTTGTGTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGC]
[+] EMBL CA999187 [CAAATATATGTTGTTCTTGAGAAAAGAGCCTCCAATCCTCCATAAACAGCACTTCCGGTTCAATCAACAACTGATTCTGTTTGTGTTGAATTCGAGCACCACTCANATCAAGAGGTAAACGTTTGTTGTTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAATAACCGGCTGACAACTCCAGCAGTTCTGAACTGAAGAAATATCTCAGCTGGCCATATTTATGCTTTTCTTCATAAACATGCTTGAATCAGCATAACTCTGTAGACGATACTTGCATTGCAGTTAACAATTGATTCGATCCATGTTGATCTCGAAATATAACACTCATAACTGTAAGAGGTACTAAATGTTTGTTGTGTTCTTCAGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGC]
consensusID : consensus_9972#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[CGAGGACGAGACAAGGGGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTTAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTTTATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTCTTTTTTTGACATATGACAAGTTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA764732 [CGAGGACGAGACAAGGGGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTTAGATGAACAATTTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACGCCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTTTATGTACGATCTCGGATACGTCAGCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTCTTTTTTTGACATATGACAAGTTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9972#0 GGGTGCTGAACGAGTCGATGGGGGAGGGGGACGCCGCCTACGCCAAGCGCGTGCTGCTCA 60
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 CCGCCGCCGGCGACGACGTCTCCCGGGGGATCGCCTCCACCCTCGCCACCCATGGCTGCC 120
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 GATTGGTTTTGGTCGGCGACGAGGGCGCCCTGGCTGGGACGGCGGAGGAGGCGCGGCGCG 180
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 GTGGGGGCGGAGGAGATGCGGTCGCTGTGGTGGGGCTGGATCTCCACGGCTGCGACGAGG 240
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 CGGCCGTCGACGCGGCGGTGGGCACGGCGTGGCGCTGCTTCGACGGCCTAGACGCCATGG 300
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 TGAACTGCTACTCCTACGAGGGTGAAGTACAAGACTGCCTCAATATAAGCGAAGATGAGT 360
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 TCAAGAAGACAATGAAAGCGAATGTAATGACACCTTGGTTTCTAGTAAAGGCAATTGCAA 420
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 AGCGACTCCGGGACTCAGAATCCAGTTGTGGAGGGTCTGTTGTATTCTTAACTCAGATTA 480
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 TTGGTGCTGAGAGAGGATTGTATCCTGGTGCTGCTGCATATGGTACAAGTTTAGGTGCCA 540
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 TTCACCAATTGGTCCGGCTGTCAGCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACG 600
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 CGGTGTGCCGTGGGCTGCACCTGGGCGACAGGTTCCCGGTGTGGGTGGGGAAGGAGAAGG 660
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 CGGAGAAGGCGACGGGGGAGGTGATGCCGCTGCGGAGATGGCTGGACCCGGAGAAGGACG 720
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ------------------------------------------------------------
consensus_9972#0 TGGCGTCCACGGTGCTGTACCTGGTTGGGGACGAGTCCCGGTACATGACTGGCAGCACCA 780
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 ---------CAAATATATGTTGTTCTTGAGAAAAGAGCCTCCAATCCTCCATAAACAGCA 51
consensus_9972#0 TATTCGTGGATGGCGCCCAGTCCATCGTGCGCCCGCGCATGCGCTCCTTCATGTAGATCA 840
consensus_9972#2 ------------------------------------------------------------
consensus_9972#1 CTTCCG-GTTCAATCAACAACTGATTCTGTTTGTGTTGAATTCGAGCACCACTCANATCA 110
consensus_9972#0 TCACATCACCGTACGTGATAATAAGCAACTACTAGTAATAGTAGGGAGATCCATAACAAT 900
consensus_9972#2 --------------------------------------------------CGAGGACGA- 9
consensus_9972#1 AGAGGTAAACGTTTGTTGTT-TCTTCAGCTGTCAGCAATGG--AGCTGGGCAAGCACAAT 167
* * ** *
consensus_9972#0 AACAAG--GAGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTCAGATGAACAAT 958
consensus_9972#2 GACAAG--GGGAGCTCCATCATGGGTTTCTGCTCTGTAGCTGTGTGTTTAGATGAACAAT 67
consensus_9972#1 AACCGGCTGACAACTCCAGCAG----TTCTGAACTGAAGAAATAT-CTCAGCTGGCCATA 222
** * * * ***** ** ***** *** ** * * * ** ** **
consensus_9972#0 TTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACG 1018
consensus_9972#2 TTGCTGTCTGTAATGATCGAGAAGACAGTACAAAGTTGTGTTCTGAGATTAGTATGTACG 127
consensus_9972#1 TTTATGCTTTTCTTCATAAACATGCTTGAATCAGCATA-ACTCTGTAGACGATACTTGCA 281
** ** * * * ** * * * * * * * **** ** * *
consensus_9972#0 CCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTATATGTACGATCTCGGA-TACGTCA 1077
consensus_9972#2 CCGCAGGCAACGTGCCATGATCTGAGCCTTCTGGTTTATGTACGATCTCGGA-TACGTCA 186
consensus_9972#1 TTGCAGTTAAC--------AATTGA----TTCGATCCATGT-TGATCTCGAAATATAACA 328
**** *** * *** * * * **** ******* * ** **
consensus_9972#0 GCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATT-TTTTTTTGACATATG 1136
consensus_9972#2 GCTCTTATTTGAAAAACACTCTCATAGCTGTATGTAAGATCATTCTTTTTTTGACATATG 246
consensus_9972#1 -CTCATAACTGTAAGAGGTACTAAATGTTTGTTGTG----------TTCTTCAGCTGTCA 377
*** ** ** ** * ** * * * *** ** ** *
consensus_9972#0 ACAAGTTAAATGTATATGGTTAAAAGAGTTATAAAAATATTTCGTCTAAAGTGAA----- 1191
consensus_9972#2 ACAAGTTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 306
consensus_9972#1 GCAATGGAGCTGGGCAAGCACAAGATGAGGGTGAACGCGGTGTGC--------------- 422
*** * ** * ** * **
consensus_9972#0 ------------------------
consensus_9972#2 NGAAAAAAAAAAAAAAAAAAAAAA 330
consensus_9972#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||