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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1576 fasta sequence
[ACGCCAAGATCGAGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCG-ACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGCGACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCGACGAGGCGGCGCGGCCGCTGTACCGGGAGGCGGACTGCCCCTACATCCCGGCGCAGCTGGCGTGCGAGGCGCACGGGCGGCCGGAGACGGCGTACCAGCGGTGGCGGTGGCAGCCGCGCGGCTGCGCCCTCCCGGCGTTCGACGCGGCGGCGATGCTGGACAGGCTGCGCGGGAAGCGCGTGATGTTCGTCGGCGACTCGCTGGGGCGCGGGCAGTTCACGTCGCTGGTGTGCCTCCTCCTCGCCGCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTGTTCACCGCCGCGGCGTACAACGCCACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAGTCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGCATCGGCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCATCGTCTTCAACACCTACCTCTGGTGGTGCACCGGCCTCCAGTTCCGAATCCTGGAGGACGGGCCGTTCGACGCCGGCGGCAACTCGTCGACGACGACGTGGGTGTCGACGGAGGAGGCGTACGCGATGGCGTTCCGGGAGATGCTGCAGTGGGCGAGGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGCATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGCGGCGGCGAACCGGGGGGC--AAC-TGC-TAC-GGC-GAGA--CGG-AGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGCGCGGGGTGATGCGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGTCGTTCCTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCA-GTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACA-TGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGAGAACACCCTTTGACTTCAAAAAAAAA]
[+] EMBL AK071031 [ACGCCAAGATCGAGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCG ACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGCGACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCGACGAGGCGGCGCGGCCGCTGTACCGGGAGGCGGACTGCCCCTACATCCCGGCGCAGCTGGCGTGCGAGGCGCACGGGCGGCCGGAGACGGCGTACCAGCGGTGGCGGTGGCAGCCGCGCGGCTGCGCCCTCCCGGCGTTCGACGCGGCGGCGATGCTGGACAGGCTGCGCGGGAAGCGCGTGATGTTCGTCGGCGACTCGCTGGGGCGCGGGCAGTTCACGTCGCTGGTGTGCCTCCTCCTCGCCGCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTGTTCACCGCCGCGGCGTACAACGCCACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAGTCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGCATCGGCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCATCGTCTTCAACACCTACCTCTGGTGGTGCACCGGCCTCCAGTTCCGAATCCTGGAGGACGGGCCGTTCGACGCCGGCGGCAACTCGTCGACGACGACGTGGGTGTCGACGGAGGAGGCGTACGCGATGGCGTTCCGGGAGATGCTGCAGTGGGCGAGGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGCATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGCGGCGGCGAACCGGGGGGC AAC TGC TAC GGC GAGA CGG AGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGCGCGGGGTGATGCGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGTCGTTCCTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCA GTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACA TGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAA ]
[+] EMBL AU082680 [ AGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCG ACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGCGACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCG ]
[+] EMBL OSC1791 [ AGATCGCCGGAGATGAAGGCGCCG CG CGCCGTCGCCGGT GNCAAGAGGGCGCGCGTCTC NCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCNGCCGAGCCTCCACTTCAATNCCGCCNCCGCCGGTGATNGGATCGAGCTGCCGGCCGCCAC NCGNAG CTGACCGAGGGGAGGACGACGACGAGGAGGTNGCGGGGGCGGCTGCGTTTCGCGNCGAACGGGAACGGCGAGGAGGAGGAGGAGGAGTGTn ]
[+] EMBL OSC005 [ AGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACG GGCGAACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGC ]
[+] EMBL AA750579 [ CGCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTGTTCACCGCCGCGGCGTACAACG CACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAGTCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGCATCGGCCACCACGGCCGTCACTGGGAGGGCGCCGACGTCATCGT ]
[+] EMBL BI796734 [ gccCGGC CGAACCGGGGGGCCAAACTTGCTTACGGGCGGAGAACCGGAAGATGATC GCGACGCCGCGTACTGGGGCTCCGACAGCCGGC CGGGGTGAT CGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGACGTTCCTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCACGTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACACTGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGAGAACACCCTTTGACTTCAAAAAAAAA]
consensusID : consensus_9999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[CTCGCCGACCCCAAGACCTACCGCCGCTGCGTCCANTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACNAGCTCCTCTNCNCCAAGCTCTTCTACCCTTGAAAATAATTAAAANNACAACTAGAAGCTTCTAGANCAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGNGAAAAAAAAAAAA]
[+] EMBL AU031450 [CTCGCCGACCCCAAGACCTACCGCCGCTGCGTCCANTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACNAGCTCCTCTNCNCCAAGCTCTTCTACCCTTGAAAATAATTAAAANNACAACTAGAAGCTTCTAGANCAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGNGAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9999#0 ACGCCAAGATCGAGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAG 60
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 AGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTC 120
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 CTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTC 180
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 CACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCGACG 240
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 ACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGC 300
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 GACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCGACGAG 360
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 GCGGCGCGGCCGCTGTACCGGGAGGCGGACTGCCCCTACATCCCGGCGCAGCTGGCGTGC 420
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 GAGGCGCACGGGCGGCCGGAGACGGCGTACCAGCGGTGGCGGTGGCAGCCGCGCGGCTGC 480
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 GCCCTCCCGGCGTTCGACGCGGCGGCGATGCTGGACAGGCTGCGCGGGAAGCGCGTGATG 540
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 TTCGTCGGCGACTCGCTGGGGCGCGGGCAGTTCACGTCGCTGGTGTGCCTCCTCCTCGCC 600
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 GCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTG 660
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 TTCACCGCCGCGGCGTACAACGCCACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAG 720
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 TCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGC 780
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 ATCGGCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCATCGTCTTCAACACCTACCTC 840
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 TGGTGGTGCACCGGCCTCCAGTTCCGAATCCTGGAGGACGGGCCGTTCGACGCCGGCGGC 900
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 AACTCGTCGACGACGACGTGGGTGTCGACGGAGGAGGCGTACGCGATGGCGTTCCGGGAG 960
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 ATGCTGCAGTGGGCGAGGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGC 1020
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 ATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGCGGCGGCGAACCGGGGGGCAACTGC 1080
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 TACGGCGAGACGGAGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGCGCGGG 1140
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 GTGATGCGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGTCGTTC 1200
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 CTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAG 1260
consensus_9999#1 ------------------------------------------------------------
consensus_9999#0 CAGTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTC 1320
consensus_9999#1 ---------------------------CTCGCCGACCCCAAGACCTACCGCCGCTGCGTC 33
********************* * *******
consensus_9999#0 CACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTC 1380
consensus_9999#1 CANTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACNAGCTCCTCTNCNCCAAGCTCTTC 93
** ********************************* ********* * ***********
consensus_9999#0 TACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTA 1440
consensus_9999#1 TACCCTTGAAAATAATTAAAANNACAACTAGAAGCTTCTAGANCAATCCATGTAGGAGTA 153
********************* ******************* *****************
consensus_9999#0 TTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCA 1500
consensus_9999#1 TTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCA 213
************************************************************
consensus_9999#0 ATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGAGAACACCCTT 1560
consensus_9999#1 ATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGNGAAAA----- 268
************************************************* *** *
consensus_9999#0 TGACTTCAAAAAAAAA 1576
consensus_9999#1 -------AAAAAAAA- 276
********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||