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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[TTTTTTATCAAGCCAATTATTATATGAATTCACCATTTTATAAAAGGAATTTTACACTCAATATGGACAAATGATTATTTGCTTTCGTCTTCTTCCAGATTTTTAGCATGAAGGTTGGAATTTTCTCATCACTTAATATTGCTTCGATGTCTGCTGCAGTCCAAACCCCCAGATTTAAACGACCGTTAGGACATTTTTGGAGCCGAGCAGCTCAGCCTGCGCTCCAAACACCTGTAACAATTATACCCGTCTCCAGACTTAAGCAGTAGCCCAGGCGACGGATGTCCACACAAACCGCTGGTGGCTCCGTACACGACCAGGAAGCAGGTCGCTCCGAGGACGCTCAGCGCCGCTCTGGACAGGAACCGCATCCTCCAGTAGCTGCGGGATTCCGGCGGAGGGGGCTGACAACTTTCCTCCGT]
[+] EMBL CA329751 [TTTTTTATCAAGCCAATTATTATATGAATTCACCATTTTATAAAAGGAATTTTACACTCAATATGGACAAATGATTATTTGCTTTCGTCTTCTTCCAGATTTTTAGCATGAAGGTTGGAATTTTCTCATCACTTAATATTGCTTCGATGTCTGCTGCAGTCCAAACCCCCAGATTTAAACGACCGTTAGGACATTTTTGGAGCCGAGCAGCTCAGCCTGCGCTCCAAACACCTGTAACAATTATACCCGTCTCCAGACTTAAGCAGTAGCCCAGGCGACGGATGTCCACACAAACCGCTGGTGGCTCCGTACACGACCAGGAAGCAGGTCGCTCCGAGGACGCTCAGCGCCGCTCTGGACAGGAACCGCATCCTCCAGTAGCTGCGGGATTCCGGCGGAGGGGGCTGACAACTTTCCTCCGT]
consensusID : consensus_109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[TCCACACAAACCTTTATTTGAAAACAAAGGGAAAGGTTAGAACTTAAATTCAAAGGCGGGTCAATGTGGGAAAAGAGCGTCACTACAGGGAGAACAAAAACGACCCGTCTGGTTCGACATTATCCTACAACGTCCTGAGGAAAGTGAACAGAAGGTGACGTCTGCAGGGTTCAGCAGGGGTTCCTGCAAACCTGCAGGTTGAACTTGCCGCTGGTGGCTCCGTACACGACCAGGAAGCAGGTCGCTCCGAGGACGCTCAGCGCCGCTCTGGACAGGAACCGCATCCTCCAGTAGCTGCGGGATTCCGGCGGAGGGGGCTGACAACTTTCCTCCGTATCATCCAGCTGGCAGAGGAGCTTGTGGAGGCAGATGACTTCCTTCTGTAGA]
[+] EMBL CA329312 [TCCACACAAACCTTTATTTGAAAACAAAGGGAAAGGTTAGAACTTAAATTCAAAGGCGGGTCAATGTGGGAAAAGAGCGTCACTACAGGGAGAACAAAAACGACCCGTCTGGTTCGACATTATCCTACAACGTCCTGAGGAAAGTGAACAGAAGGTGACGTCTGCAGGGTTCAGCAGGGGTTCCTGCAAACCTGCAGGTTGAACTTGCCGCTGGTGGCTCCGTACACGACCAGGAAGCAGGTCGCTCCGAGGACGCTCAGCGCCGCTCTGGACAGGAACCGCATCCTCCAGTAGCTGCGGGATTCCGGCGGAGGGGGCTGACAACTTTCCTCCGTATCATCCAGCTGGCAGAGGAGCTTGTGGAGGCAGATGACTTCCTTCTGTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_109#0 TTTTTTATCAAGCCAATTATTATATGAATTCACCATTTTATAAAAGGAATTTTACACTCA 60
consensus_109#1 ------------------------------------------------------------
consensus_109#0 ATATGGACAAATGATTATTTGCTTTCGTCTTCTTCCAGATTTTTAGCATGAAGGTTGGAA 120
consensus_109#1 -----------------TCCACACAAACCTTTATTTGAAAACAAAGGG-AAAGGTTAGAA 42
* * *** * * ** ****** ***
consensus_109#0 TTTTCTCATCACTTAATATTGCTTCGATGTCTGCTGCAGTCCAAACCCCCAGATTTAAAC 180
consensus_109#1 CTTAA-----ATTCAAAGGCGGGTCAATGT-----GGGAAAAGAGCGTCACTACAGGGAG 92
** * * ** * ** **** * * * * * *
consensus_109#0 GACCGTTAGGACATTTTTGGAGCCGAGCAGCTCAGCCTGCGCTCCAAACACCTGTAACAA 240
consensus_109#1 AACAAAAACGACCCGTCTGGT-TCGACATTATCCTACAACGTCCTGAGGAAAGTGAACAG 151
** * *** * *** *** ** * ** * * * ****
consensus_109#0 TTATACCCGTCTCCAGACTTAAGCAGTAGCCCAGGCGA--CGGATGTCCACACAAACCGC 298
consensus_109#1 AAGGTGACGTCTGCAGGGTTCAGCAGGGGTTCCTGCAAACCTGCAGGTTGAACTTGCCGC 211
***** *** ** ***** * * ** * * * * ** ****
consensus_109#0 TGGTGGCTCCGTACACGACCAGGAAGCAGGTCGCTCCGAGGACGCTCAGCGCCGCTCTGG 358
consensus_109#1 TGGTGGCTCCGTACACGACCAGGAAGCAGGTCGCTCCGAGGACGCTCAGCGCCGCTCTGG 271
************************************************************
consensus_109#0 ACAGGAACCGCATCCTCCAGTAGCTGCGGGATTCCGGCGGAGGGGGCTGACAACTTTCCT 418
consensus_109#1 ACAGGAACCGCATCCTCCAGTAGCTGCGGGATTCCGGCGGAGGGGGCTGACAACTTTCCT 331
************************************************************
consensus_109#0 CCGT---------------------------------------------------- 422
consensus_109#1 CCGTATCATCCAGCTGGCAGAGGAGCTTGTGGAGGCAGATGACTTCCTTCTGTAGA 387
****
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |