These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [TTCGCTTTAGCGTGGTATGATTTAGGTGCGCCTCGCTCGTCTTTTGCTCCTTTGTTTTGTGTTTTGCATTCGTGTGTTTCGCACTGTCATCTTTACATCCTAAAAATGAAACATAATGCATGCTGCTATTCGTTTGTTTACAAATGCTAACCAAAGCTAACGGTTAGCTAATAGTTGTTTGCTAGCTGAAGTGCACATGTCCTGCTTCCTTCTGATTTCTTACTTTTTCAGTGTTTCCTCGAAACTTGCAGTTAGAAATAAGGGATGTTGGCGTGCCGTCATGTGTTTAAGGGGTTGTTTTTTCTGCCTTTGACAGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGGAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATT] [+] EMBL CA588292 [TTCGCTTTAGCGTGGTATGATTTAGGTGCGCCTCGCTCGTCTTTTGCTCCTTTGTTTTGTGTTTTGCATTCGTGTGTTTCGCACTGTCATCTTTACATCCTAAAAATGAAACATAATGCATGCTGCTATTCGTTTGTTTACAAATGCTAACCAAAGCTAACGGTTAGCTAATAGTTGTTTGCTAGCTGAAGTGCACATGTCCTGCTTCCTTCTGATTTCTTACTTTTTCAGTGTTTCCTCGAAACTTGCAGTTAGAAATAAGGGATGTTGGCGTGCCGTCATGTGTTTAAGGGGTTGTTTTTTCTGCCTTTGACAGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGGAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATT] consensusID : consensus_1406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [AAAGTAACATTTCCGGTTGCGATCCGAACTATGCGCCGCGGCGCGCAGTTGTCATTCGCTTTAGCGTGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGAAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATTCAGGCCTCTCCACCCCAAAAAACAGAGAAAAAGGAGTCTCCAGTTCCAGCCCAGCTATCTCCTCTGCAGGGCCAGAGTGTGCTGAGTTTCAGCCCCTCGCGGACAGCCAGTACGAGTCCCAAGTTCTCTCCGAGCTGTGTCCCTGGGTACAGTCCCTCTCTCAACAACCCTTCAACCCCGAACAGCGCGGGAACAG] [+] EMBL BU807811 [AAAGTAACATTTCCGGTTGCGATCCGAACTATGCGCCGCGGCGCGCAGTTGTCATTCGCTTTAGCGTGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGAAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATTCAGGCCTCTCCACCCCAAAAAACAGAGAAAAAGGAGTCTCCAGTTCCAGCCCAGCTATCTCCTCTGCAGGGCCAGAGTGTGCTGAGTTTCAGCCCCTCGCGGACAGCCAGTACGAGTCCCAAGTTCTCTCCGAGCTGTGTCCCTGGGTACAGTCCCTCTCTCAACAACCCTTCAACCCCGAACAGCGCGGGAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1406#0 TTCGCTTTAGCGTGGTATGATTTAGGTGCGCCTCGCTCGTCTTTTGCTCCTTTGTTTTGT 60 consensus_1406#1 ------------------------------------------------------------ consensus_1406#0 GTTTTGCATTCGTGTGTTTCGCACTGTCATCTTTACATCCTAAAAATGAAACATAATGCA 120 consensus_1406#1 ------------------------------------------------------------ consensus_1406#0 TGCTGCTATTCGTTTGTTTACAAATGCTAACCAAAGCTAACGGTTAGCTAATAGTTGTTT 180 consensus_1406#1 ------------------------------------------------------------ consensus_1406#0 GCTAGCTGAAGTGCACATGTCCTGCTTCCTTCTGATTTCTTACTTTTTCAGTGTTTCCTC 240 consensus_1406#1 ------------------------------------------------------------ consensus_1406#0 GAAACTTGCAGTTAGAAATAAGGGATGT-TGGCGTGCCGTCATGTGTTTAAGGGGTTGTT 299 consensus_1406#1 -AAAGTAACATTTCCGGTTGCGATCCGAACTATGCGCCGCGGCGCGC------AGTTGTC 53 *** * ** ** * * * * **** * * ***** consensus_1406#0 TTTTCTGCCTTTGACAGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAG 359 consensus_1406#1 ATTC--GCTTTAGCGTGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAG 111 ** ** ** * ******************************************** consensus_1406#0 TATGATAGATAAGGCACTAAGGATGAGGAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGC 419 consensus_1406#1 TATGATAGATAAGGCACTAAGGATGAGAAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGC 171 *************************** ******************************** consensus_1406#0 CTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACT 479 consensus_1406#1 CTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACT 231 ************************************************************ consensus_1406#0 GTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGC 539 consensus_1406#1 GTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGC 291 ************************************************************ consensus_1406#0 AACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGC 599 consensus_1406#1 AACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGC 351 ************************************************************ consensus_1406#0 TCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGG 659 consensus_1406#1 TCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGG 411 ************************************************************ consensus_1406#0 TATT-------------------------------------------------------- 663 consensus_1406#1 TATTCAGGCCTCTCCACCCCAAAAAACAGAGAAAAAGGAGTCTCCAGTTCCAGCCCAGCT 471 **** consensus_1406#0 ------------------------------------------------------------ consensus_1406#1 ATCTCCTCTGCAGGGCCAGAGTGTGCTGAGTTTCAGCCCCTCGCGGACAGCCAGTACGAG 531 consensus_1406#0 ------------------------------------------------------------ consensus_1406#1 TCCCAAGTTCTCTCCGAGCTGTGTCCCTGGGTACAGTCCCTCTCTCAACAACCCTTCAAC 591 consensus_1406#0 -------------------- consensus_1406#1 CCCGAACAGCGCGGGAACAG 611 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |