These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [CCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCTTTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACATCTTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGTCACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTTTTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACATGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGGGCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCTTCGACACTGCCAAGTCCAAGCTGACCCAGAACAACTTTGCGCTGGGTTACAGGGCCGGCGACTTCCAGCTGCACACCAACGTGAA] [+] EMBL BU805393 [CCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCTTTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACATC TGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGTCACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTTTTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACATGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGGGCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCTTCGACACTGCCAAGTCCAAGCTGACCCAGAACAACTTTGCGCTGGGTTACAGGGCCGGCGACTTCCAGCTGCACACCAACGTGAA] [+] EMBL BU806851 [ GGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCTTTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACATCTTGTCTTCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGTCACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTTTTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACATGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGGGCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCT ] consensusID : consensus_1933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TCACCCGTTAGAGTGCTAAGCTAAGCTAGCTGTCAATCCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGAGTTCAACACATCTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGNTCCACCGTGG] [+] EMBL BU807585 [TCACCCGTTAGAGTGCTAAGCTAAGCTAGCTGTCAATCCACTCAGCAGCATCACGCCAGGGGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCCCTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGAGTTCAACACATCTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAGATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACCGAGGNTCCACCGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1933#0 -------------------------------------CCACTCAGCAGCATCACGCCAGG 23 consensus_1933#1 TCACCCGTTAGAGTGCTAAGCTAAGCTAGCTGTCAATCCACTCAGCAGCATCACGCCAGG 60 *********************** consensus_1933#0 GGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCC 83 consensus_1933#1 GGCACTCTAGGCTTCGCAGACTCCCCGTCAAAACACCTTTGCACTGCACGATGGCCGTCC 120 ************************************************************ consensus_1933#0 CTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGGCT 143 consensus_1933#1 CTCCTTCCTACTCAGACCTGGGCAAAGCTGCCAAGGACATCTTCAGCAAGGGCTATGG-- 178 ********************************************************** consensus_1933#0 TTGGGCTTGTAAAACTGGACCTAAAGACCAAATCAGAAACCGGAGTGGAGTTCAACACAT 203 consensus_1933#1 ------------------------------------------------AGTTCAACACAT 190 ************ consensus_1933#0 CTTGGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAG 263 consensus_1933#1 CT-GGCTCCAGCAACATAGACACGGGGAAGGCTGCTGGAAACCTGGAGACCAAGTACAAG 249 ** ********************************************************* consensus_1933#0 ATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACC 323 consensus_1933#1 ATGAAGGAGCTGGGCCTGAGCTTCAGCCAGAAGTGGAACACTGATAACACCCTGGCTACC 309 ************************************************************ consensus_1933#0 GAGGT--CACCGTGGAGGACCAGCTGACTCAAGGACTGAAAGTCGCTTTAGATACCTCTT 381 consensus_1933#1 GAGGNTCCACCGTGG--------------------------------------------- 324 **** ******** consensus_1933#0 TTGTACCAAACACAGGGAAGAAAAGTGGGAAACTGAAGACGGGCTACAAGCGCGACTACA 441 consensus_1933#1 ------------------------------------------------------------ consensus_1933#0 TGAACCTGGGCTGCGATGTCGACTTCGAGGGCCCCATCATCCTCGCCGCCGCCGTGCTGG 501 consensus_1933#1 ------------------------------------------------------------ consensus_1933#0 GCTACGAGGGCTGGTTGGCCGGATACCAGATGGCCTTCGACACTGCCAAGTCCAAGCTGA 561 consensus_1933#1 ------------------------------------------------------------ consensus_1933#0 CCCAGAACAACTTTGCGCTGGGTTACAGGGCCGGCGACTTCCAGCTGCACACCAACGTGA 621 consensus_1933#1 ------------------------------------------------------------ consensus_1933#0 A 622 consensus_1933#1 - |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |