These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 804 fasta sequence [CTCTCAAAGATGGCGCTGTCCTGTCCGAGCCTGTTTAGTAATTTGTCTCTGATGAGACTGTGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTGGTCCTGCTTTTCCAGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGACTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGAAGATCACGAGCGGAGTACAGTTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGTTCGCAGAGACTTGATCAAAGCCATTCCACTTGTGCTCATAACCATCCCCCCCCTGGCCAACTACCTGGTGTTTGTCATGATGTACTTTTTCCCAAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGAGTTCCGAGGAGTGTACCATTCTCTCCGAGCTCGGCACCACTGGCCCGTCATCGCAGGGCTGCAGAACACCGGCCGCCGTATCAAAGAGGGCCAACTCCAGGGCCGCCTGCTGGACCTGTGCGCTAAATTGCAGAGCGGTCAACACCCCGCGGTGTCTGAAGTCCTGGCTGTTCGTGGCCTCTTCTCCAAACGGGCTCTTGCCATAAAGAGGATGAAAGCGGATCACATGAGACACATTAGCCCCCTGCTCTTCCTGACGCCTCGCCTC] [+] EMBL CA846217 [CTCTCAAAGATGGCGCTGTCCTGTCCGAGCCTGTTTAGTAATTTGTCTCTGATGAGACTGTGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTTGTCCTGCTTTTCCAGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGAGTACAGTTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGTTCGCAGAGACTTGATCAAAGCCATTCCACTTGTGCTCATAACCATCCCCCCCCTGGCCAACTACCTGGTGTTTGTCATGATGTACTTTTTCCCAAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGAGTTCCGAGGAGTGTACCATTCTCTCCGAGCTCGGCACCACTGGCCCGTCATCGCAGGGCTGCAGAACACCGGCCGCCGTATCAAAGAGGGCCAACTCCAGGGCCGCCTGCTGGACCTGTGCGCTAAATTGCAGAGCGGTCAACACCCCGCGGTGTCTGAAGTCCTGGCTGTTCGTGGCCTCTTCTCCAAACGGGCTCTTGCCATAAAGAGGATGAAAGCGGATCACATGAGACACATTAGCCCCCTGCTCTTCCTGACGCCTCGCCTC] [+] EMBL FR0061511 [ CTGTTTAGTAATTTGTCTCTGATGAGACTGTGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTGGTCCTGCTTTTCCAGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGACTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGAATATCACGAGCGGAGTACAGTTCCAAGATTTGCC ] consensusID : consensus_1981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence [TGCACGAGGCTGTTAAAAGGGGGTGAACCAGGATCTTCCCTGTCTACACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGCACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGGGCACAGCTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGTAGTCCGAGGAGGGGACCATTCTTCTGCGAGCGTCGGCACCACTTGGCCCCGTCAATGCGCAAGGGCTTGGCAGA] [+] EMBL FR0060638 [TGCACGAGGCTGTTAAAAGGGGGTGAACCAGGATCTTCCCTGTCTACACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGGGCACAGCTCCAAGATTTGCCTTACAGGGACATG ] [+] EMBL FR0060980 [ ACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGACGATATGTTCAAACCAGGCTCCAGAGACTCAATAGCAAGCACGAAAGTTTCCTCAAAATGCGATTTCCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGATGCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGAGTACAGTTCCAAGATTTGCCTTACAGGGACATGGAGAAGCTCAGACAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGTAGTCCGAGGAGGGGACCATTCTTCTGCGAGCGTCGGCACCACTTGGCCCCGTCAATGCGCAAGGGCTTGGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1981#0 CTCTCAAAGATGGCGCTGTCCTGTCCGAGCCTGTTTAGTAATTTGTCTCTGATGAGACTG 60 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 TGTATAAGGACAAAAATAATAACTAATGGCTATTATTCTCACCACTGGTCCTGCTTTTCC 120 consensus_1981#1 --------------------------TGCACGAGGCTGTTAAAAGGGG----GTGAACCA 30 ** * * * * ** * * consensus_1981#0 AGATCTTCCCTGTCTAGACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATAT 180 consensus_1981#1 GGATCTTCCCTGTCTACACACTATTCTTCCTCCAGTGTGAGACGAAGCGTTGGGCGATAT 90 *************** ******************************************* consensus_1981#0 GTTCAAACCAGGCTCCAGAGACTCAATAGCAAGTACGAAAGTTTCCTCAAAATGCGACTT 240 consensus_1981#1 GTTCAAACCAGGCTCCAGAGACTCAATAGCAAGCACGAAAGTTTCCTCAAAATGCGATTT 150 ********************************* *********************** ** consensus_1981#0 CCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGAT 300 consensus_1981#1 CCACGTTTTTACCAGCTCTACCACACTTTTATGGAGGGATTTAAACTGCTGTTCCACGAT 210 ************************************************************ consensus_1981#0 GCCAAAGAAGTGCAGAGGATAAAAACAAAGAAGATCACGAGCGGAGTACAGTTCCAAGAT 360 consensus_1981#1 GCCAAAGAAGTGCAGAGGATAAAAACAAAGATGATCACGAGCGGGGCACAGCTCCAAGAT 270 ******************************* ************ * **** ******** consensus_1981#0 TTGCCTTACAGGGACATGGAGAAGCTCAGACAGGTTCGCAGAGACTTGATCAAAGCCATT 420 consensus_1981#1 TTGCCTTACAGGGACATGGAGAAGCTCAGACAGG-------------------------- 304 ********************************** consensus_1981#0 CCACTTGTGCTCATAACCATCCCCCCCCTGGCCAACTACCTGGTGTTTGTCATGATGTAC 480 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 TTTTTCCCAAGGCAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGAGTTC 540 consensus_1981#1 ------------CAGATCCTGATCCCTCAGTTCTGGACTCCCAGACAGCAGGTGGTAGTC 352 ******************************************* ** consensus_1981#0 CGAGGAGTGTACCATTCT-CTCCGAGC-TCGGCACCACTGG--CCCGTCATCGCAGGGCT 596 consensus_1981#1 CGAGGAGGGGACCATTCTTCTGCGAGCGTCGGCACCACTTGGCCCCGTCAATGCGCAAGG 412 ******* * ******** ** ***** *********** * ******* ** consensus_1981#0 GCAGAACACCGGCCGCCGTATCAAAGAGGGCCAACTCCAGGGCCGCCTGCTGGACCTGTG 656 consensus_1981#1 GCTTGGCAGA-------------------------------------------------- 422 ** ** consensus_1981#0 CGCTAAATTGCAGAGCGGTCAACACCCCGCGGTGTCTGAAGTCCTGGCTGTTCGTGGCCT 716 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 CTTCTCCAAACGGGCTCTTGCCATAAAGAGGATGAAAGCGGATCACATGAGACACATTAG 776 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 CCCCCTGCTCTTCCTGACGCCTCGCCTC 804 consensus_1981#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |