These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [TCGATCNAAGAGGGCACATAATCGGACCCTCGGCCTTTATTGTGCTTAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGAGCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTAGACGCTGACAGAAATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGGTTAGATATTTCTTTTCCTTGATTCATTTTGTCTCTCACTATTTGGGGAAAAAAGACTCACAAGATTTTAAGGTCACATATTATTAACATGATTGTGGATGTGCAGATTTAAAGGATATGTCTCT] [+] EMBL CA588558 [TCGATCNAAGAGGGCACATAATCGGACCCTCGGCCTTTATTGTGCTTAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGAGCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTAGACGCTGACAGAAATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGGTTAGATATTTCTTTTCCTTGATTCATTTTGTCTCTCACTATTTGGGGAAAAAAGACTCACAAGATTTTAAGGTCACATATTATTAACATGATTGTGGATGTGCAGATTTAAAGGATATGTCTCT] consensusID : consensus_709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CGTGATGGCACATAATCGGACCCTCGGCCTTTATTGTGACCAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGATCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTTGACGCTGACAGAGATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGATTTAAAGGATATGTCTCTCATGGTGCTGCGGACCAGAGGTCCCGCCAAGCTCCCAAACGACTACAAACTCACTCTGCACATTTCTCAGAGT] [+] EMBL CA589487 [CGTGATGGCACATAATCGGACCCTCGGCCTTTATTGTGACCAGACTATAAGCGTTGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCACTGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCAGGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGATGATCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGATAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGTTGACGCTGACAGAGATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATGGGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTGGAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGATTTAAAGGATATGTCTCTCATGGTGCTGCGGACCAGAGGTCCCGCCAAGCTCCCAAACGACTACAAACTCACTCTGCACATTTCTCAGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_709#0 TCGATCNAAGAGGGCACATAATCGGACCCTCGGCCTTTATTGTGCTTAGACTATAAGCGT 60 consensus_709#1 ------CGTGATGGCACATAATCGGACCCTCGGCCTTTATTGTGACCAGACTATAAGCGT 54 ** ******************************** ************* consensus_709#0 TGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCAC 120 consensus_709#1 TGTGTACGTGGTTGGATCGGATCTTCTTATAAATTCCAACAGATGTGCACCTCCAGGCAC 114 ************************************************************ consensus_709#0 TGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCA 180 consensus_709#1 TGACTTCTTCTCTGTCAAATGCACACCCAATGTCCAGTACATCATCAGCCCCCCACCCCA 174 ************************************************************ consensus_709#0 GGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGAT 240 consensus_709#1 GGAGACATCCCACCTCTCTCCACTCCCTCTTAGTGGAGACTCAATGATAATCGTCAGGAT 234 ************************************************************ consensus_709#0 GAGCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGA 300 consensus_709#1 GATCCATGCCAGTGATACAGAAAATGAAAGCAAGCTGTCTGTAAGGTACTATGGGTCTGA 294 ** ********************************************************* consensus_709#0 TAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGT 360 consensus_709#1 TAAAAAAGTACTGGGTACAGCGCGCTTGTACTTAACAGCTCTTGAGATCTCCCTGGATGT 354 ************************************************************ consensus_709#0 AGACGCTGACAGAAATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATG 420 consensus_709#1 TGACGCTGACAGAGATGGGGTTGTGGAGAGGAATAACCCCAATAAGGGGTCATGGAAATG 414 ************ ********************************************** consensus_709#0 GGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTG 480 consensus_709#1 GGGTCCAAATGGGCATGGTGCTGTCCTATTAGTCAATTGTGACTGTGAGCGGACATACTG 474 ************************************************************ consensus_709#0 GAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGGTTAGATATTTCTTTT 540 consensus_709#1 GAAGACTCCAGACAGCGAGAAGACATATATTTCCAAAGTGTCTGATTTAAAGGATATGTC 534 ******************************************** ** * * * * consensus_709#0 CCTTGATTCATTTTGTCTCTCACTATTTGGGGAAAAAAGACTCACAAGATTTTAAGGTCA 600 consensus_709#1 TCTCA--TGGTGCTGCGGACCAGAGGTCCCGCCAAGC--TCCCAAACGACTACAAACTCA 590 ** * * ** ** * * ** * ** * ** * ** *** consensus_709#0 CATATTATTAACATGATTGTGGATGTGCAGATTTAAAGGATATGTCTCT 649 consensus_709#1 C----TCTGCACATTTCTCAGAGT------------------------- 610 * * * **** * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |