These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGAAACTCGACAGCCCCGTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTGCTCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAGTTCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAGAAAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCCCTGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACGCAGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAGTGGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACTGTCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAACACGACATGTACAGCTTT] [+] EMBL CA591359 [TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGAAACTCGACAGCCCCGTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTGCTCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAGTTCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAGAAAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCCCTGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACGCAGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAGTGGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACTGTCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAACACGACATGTACAGCTTT] consensusID : consensus_941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGAAACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTCCCCCTTTGA] [+] EMBL FR0058881 [TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGAAACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTCCCCCTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_941#0 TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCG 60 consensus_941#1 TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCG 60 ****** **************** ************************** ******** consensus_941#0 GCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGA 120 consensus_941#1 GCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGA 120 ******************************** ******************** ****** consensus_941#0 AACTCGACAGCCCC-GTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTG 179 consensus_941#1 AACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTC 180 ************** * ********* * * * ****** * consensus_941#0 CTCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAG 239 consensus_941#1 CCCCTTTGA--------------------------------------------------- 189 * ** * consensus_941#0 TTCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAG 299 consensus_941#1 ------------------------------------------------------------ consensus_941#0 AAAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCC 359 consensus_941#1 ------------------------------------------------------------ consensus_941#0 CTGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACG 419 consensus_941#1 ------------------------------------------------------------ consensus_941#0 CAGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAG 479 consensus_941#1 ------------------------------------------------------------ consensus_941#0 TGGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACT 539 consensus_941#1 ------------------------------------------------------------ consensus_941#0 GTCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAA 599 consensus_941#1 ------------------------------------------------------------ consensus_941#0 CACGACATGTACAGCTTT 617 consensus_941#1 ------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |