cluster # 1006

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Anopheles gambiae
cluster # 1006 cluster # 1006 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1006#0 length = 376 sequences # 1

consensus_1006#1 length = 346 sequences # 1

consensusID : consensus_1006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [ACTTTCGCGCGTTGGTTACATCTCGATTGTTTTTACAGTGTGTGATTGAATGTGATGTTATAGTACACACGAAAAATATGGTTAAAGTGCGTGTTGATGCCAGTTTATAGTGTGGCTGTTACTAATCCGTTGGTCGCATATGGCAACCTACAACGGTGTGTCATTGTTCTTTTTCTTCTATAATAGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGTATAAAAAAGGAATAAAAAATTGTTAATTTAGAAAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTGTGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACAAAATATATACCATAGT]

[+] EMBL AGA282636            [ACTTTCGCGCGTTGGTTACATCTCGATTGTTTTTACAGTGTGTGATTGAATGTGATGTTATAGTACACACGAAAAATATGGTTAAAGTGCGTGTTGATGCCAGTTTATAGTGTGGCTGTTACTAATCCGTTGGTCGCATATGGCAACCTACAACGGTGTGTCATTGTTCTTTTTCTTCTATAATAGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGTATAAAAAAGGAATAAAAAATTGTTAATTTAGAAAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTGTGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACAAAATATATACCATAGT]




>consensus_1006#0
ACTTTCGCGCGTTGGTTACATCTCGATTGTTTTTACAGTGTGTGATTGAATGTGATGTTA
TAGTACACACGAAAAATATGGTTAAAGTGCGTGTTGATGCCAGTTTATAGTGTGGCTGTT
ACTAATCCGTTGGTCGCATATGGCAACCTACAACGGTGTGTCATTGTTCTTTTTCTTCTA
TAATAGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGTATAAAA
AAGGAATAAAAAATTGTTAATTTAGAAAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTG
TGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACA
AAATATATACCATAGT

consensusID : consensus_1006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CGCGTTGGTTACATCTCGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGAATAAAAAAGGAATATAAAATTGTTAATTTAGATAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTGTGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACAAAATATATACCATAGTGTTTGTGGATCCGGTTATATTGCTCGAGCGCTTCCGACGGGCCGGCGCTTTTACTAGCAGCGCGCATTAGAAGCAGCCGTCGGCAACGTCGCTCGATCGTACGATGGTCGTGCTGGAAGGAGGCACGATGGGGACATC]

[+] EMBL AGA284803            [CGCGTTGGTTACATCTCGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGAATAAAAAAGGAATATAAAATTGTTAATTTAGATAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTGTGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACAAAATATATACCATAGTGTTTGTGGATCCGGTTATATTGCTCGAGCGCTTCCGACGGGCCGGCGCTTTTACTAGCAGCGCGCATTAGAAGCAGCCGTCGGCAACGTCGCTCGATCGTACGATGGTCGTGCTGGAAGGAGGCACGATGGGGACATC]




>consensus_1006#1
CGCGTTGGTTACATCTCGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAA
TATCGAATAAAAAAGGAATATAAAATTGTTAATTTAGATAAAAGAAGAGAAATTTCTCTT
GAAGTGTGTGTGTGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCG
GGCAGTGAGACAAAATATATACCATAGTGTTTGTGGATCCGGTTATATTGCTCGAGCGCT
TCCGACGGGCCGGCGCTTTTACTAGCAGCGCGCATTAGAAGCAGCCGTCGGCAACGTCGC
TCGATCGTACGATGGTCGTGCTGGAAGGAGGCACGATGGGGACATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1006#0      ACTTTCGCGCGTTGGTTACATCTCGATTGTTTTTACAGTGTGTGATTGAATGTGATGTTA 60
consensus_1006#1      ------------------------------------------------------------
                                                                                  

consensus_1006#0      TAGTACACACGAAAAATATGGTTAAAGTGCGTGTTGATGCCAGTTTATAGTGTGGCTGTT 120
consensus_1006#1      ------------------------------------------------------------
                                                                                  

consensus_1006#0      ACTAATCCGTTGGTCGCATATGGCAACCTACAACGGTGTGTCATTGTTCTTTTTCTTCTA 180
consensus_1006#1      -----------------------------------------------CGCGTTGGTTACA 13
                                                                         **  **  *

consensus_1006#0      TAATAGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGTATAAAA 240
consensus_1006#1      TC-TCGTGCGTTAAATCTGTGTGAAAGTTTATAAAAGTGGTTTCAAAATATCGAATAAAA 72
                      *  * ************************************************ ******

consensus_1006#0      AAGGAATAAAAAATTGTTAATTTAGAAAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTG 300
consensus_1006#1      AAGGAATATAAAATTGTTAATTTAGATAAAAGAAGAGAAATTTCTCTTGAAGTGTGTGTG 132
                      ******** ***************** *********************************

consensus_1006#0      TGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACA 360
consensus_1006#1      TGTCTGTATGCGGCGTCGTGTGTCGCGCCTTGGAGTGCTTTTGTGCCGGGCAGTGAGACA 192
                      ************************************************************

consensus_1006#0      AAATATATACCATAGT-------------------------------------------- 376
consensus_1006#1      AAATATATACCATAGTGTTTGTGGATCCGGTTATATTGCTCGAGCGCTTCCGACGGGCCG 252
                      ****************                                            

consensus_1006#0      ------------------------------------------------------------
consensus_1006#1      GCGCTTTTACTAGCAGCGCGCATTAGAAGCAGCCGTCGGCAACGTCGCTCGATCGTACGA 312
                                                                                  

consensus_1006#0      ----------------------------------
consensus_1006#1      TGGTCGTGCTGGAAGGAGGCACGATGGGGACATC 346