These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 604 fasta sequence [CCGGACCTTACGTCAAGTGACGAAGTGTCAAAATGCTCTAGATTCCACCACCTGATATTTTTAATCCACCTTGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAGTAAAATGGTGTAATAATAATATCGTGTAAAATTAGTAAACGCTTGCTTGCTTTTTTATTCAGGAG] [+] EMBL BM585267 [CCGGACCTTACGTCAAGTGACGAAGTGTCAAAATGCTCTAGATTCCACCACCTGATATTTTTAATCCACCTTGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAGTAAAATGGTGTAATAATAATATCGTGTAAAATTAGTAAACGCTTGCTTGCTTTTTTATTCAGGAG] [+] EMBL BM641139 [ ccgATTTTTAATCCACCTTGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL BM587926 [ ccGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATT CATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACAACATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGACCAG ] [+] EMBL BM642035 [ ccgCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAG ] [+] EMBL BM602022 [ ccgACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAGTAAAATGGTGTAATAATAATATCGTGTAAAATTAGTAAAC ] [+] EMBL BM633598 [ ccgGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAGTAAAATGGTGTAATAATAATATCGTGTAAAATTAGT ] consensusID : consensus_10063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 493 fasta sequence [CCGGTTTACACAATATTACCAAATCAATCGACAGGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAGTAAAATGGTGTAATAATAATATCGTGTAAAATTAGT] [+] EMBL BM580223 [CCGGTTTACACAATATTACCAAATCAATCGACAGGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAGTAAAATGGTGTAATAATAATATCGTGTAAAATTAGT] [+] EMBL BM587980 [ CCGAATCAATCGAAAGGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] consensusID : consensus_10063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [CCGGGGTAATCACTCAAAACATGGCTCTCTATTCCAACCTAAGAACATTTTAGTTCGTCTCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCGG] [+] EMBL BM636453 [CCGGGGTAATCACTCAAAACATGGCTCTCTATTCCAACCTAAGAACATTTTAGTTCGTCTCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL CNS08CF7 [ gtaaATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGGACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGAAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCGG] consensusID : consensus_10063#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 446 fasta sequence [CCGCGGACGCGTGGGTGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGG] [+] EMBL BM582329 [CCGCGGACGCGTGGGTGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTGG] [+] EMBL BM636373 [ ccGGACACAACCATCACCATACGTACTAGAGCAGATTAAGATT CATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL BM610192 [ ccgCACAATCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL BM642755 [ ccgCACAACCATCACCATACGTACTAGAGCAGATTAAGATT CATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCA ] [+] EMBL BM642982 [ ccgCAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL BM647061 [ ccgCAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAACATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCA ] [+] EMBL BM634321 [ ccgAACCATCACCATACGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL BM632098 [ cgacCCACGCGTCC GAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCA ] [+] EMBL BM592141 [ ccgCGTACTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCAT ] [+] EMBL BM623511 [ ccgGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG ] [+] EMBL BM629153 [ TCACCCTTTGAGCCACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCCTGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCCAGAATCCGGCAGAGATTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTG ] [+] EMBL BM601416 [ CCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGA ] consensusID : consensus_10063#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 421 fasta sequence [CCGCGGACGCGTGGGCTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG] [+] EMBL BM619146 [CCGCGGACGCGTGGGCTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG] [+] EMBL BM645685 [CCGCCCACGCGT C CGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG] [+] EMBL BM634056 [ ccGCTAGAGCAGATTAAGATTGTAGCATACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTTGGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGAGCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAGGTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAATTTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG] consensusID : consensus_10063#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [CCGCCCACGCGTCCGACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG] [+] EMBL BM590202 [CCGCCCACGCGTCCGACGATTCTTAAGCTAAATATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACATAATAAACATATTTCAAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10063#0 CCGGACCTTACGTCAAGTGACGAAGTGTCAAAATGCTCTAGATTCCACCACCTGATATTT 60 consensus_10063#1 ------------------------------------------------------------ consensus_10063#3 --------------------------------------------------------CCGC 4 consensus_10063#4 ------------------------------------------------------------ consensus_10063#2 ----------------------------------------------------------CC 2 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 TTAATCCACCTTGGACACAACCATCACCATACGTACTAGAGCAGATTA-AGATTGTAGCA 119 consensus_10063#1 ----------------CCGGTTTACACAATAT-TACCAAATCA-ATCG-ACA----GGCA 37 consensus_10063#3 GGACGCGTGGGTGGACACAACCATCACCATACGTACTAGAGCAGATTA-AGATTGTAGCA 63 consensus_10063#4 --------------------CCGCGGACGCGTGGGCTAGAGCAGATTA-AGATTGTAGCA 39 consensus_10063#2 GGGGTAATCACTCAAAACATGGCTCTCTATTCCAACCTAAGAACATTTTAGTTCGTCTCA 62 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 TACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTT 179 consensus_10063#1 TACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTT 97 consensus_10063#3 TACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTT 123 consensus_10063#4 TACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTT 99 consensus_10063#2 TACTTATTGGTGTTTAGGGTGGTTTAAGACCGGCAACTCAACATCATGGGTCACGGATTT 122 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 GGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGA 239 consensus_10063#1 GGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGA 157 consensus_10063#3 GGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGA 183 consensus_10063#4 GGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGA 159 consensus_10063#2 GGTGAACTTGCTAAGGTACGTGGAATTGTCACGCACAAGATTTCACCCTTTGAGCAACGA 182 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 GCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAG 299 consensus_10063#1 GCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAG 217 consensus_10063#3 GCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAG 243 consensus_10063#4 GCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAG 219 consensus_10063#2 GCCTTTGCGAATGTCATTAGCAAAGGTGTCCCGAACACTCTCCGTCGAATCCGTTCCCAG 242 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 GTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAAT 359 consensus_10063#1 GTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAAT 277 consensus_10063#3 GTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAAT 303 consensus_10063#4 GTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAAT 279 consensus_10063#2 GTTTTCATCGTGGCTCCTCCATTCGTCATGGGATACATGGTTTACAACTATATCGAAAAT 302 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 TTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAA 419 consensus_10063#1 TTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAA 337 consensus_10063#3 TTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAA 363 consensus_10063#4 TTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAA 339 consensus_10063#2 TTGCACACCCAGATGAATCGCAAGAATCCGGCAGAGTTTGAGAACGATTCTTAAGCTAAA 362 consensus_10063#5 ---------------------------CCGCCCACGCGTCCGA-CGATTCTTAAGCTAAA 32 *** * * * ** **************** consensus_10063#0 TATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACA 479 consensus_10063#1 TATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACA 397 consensus_10063#3 TATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACA 423 consensus_10063#4 TATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACA 399 consensus_10063#2 TATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACA 422 consensus_10063#5 TATCTAGGTGATGCTATAGCATATTTGGAAAATATGTCACATGAAGGCATGATAGCAACA 92 ************************************************************ consensus_10063#0 TAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAG 539 consensus_10063#1 TAATAAACATATTTCAAATGTGATCAGATTGTTAAAATGCGTTATGAGAAACCAGTTCAG 457 consensus_10063#3 TAATAAACATATTTCAAATGTGG------------------------------------- 446 consensus_10063#4 TAATAAACATATTTCAAATGTG-------------------------------------- 421 consensus_10063#2 TAATAAACATATTTCAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATG 482 consensus_10063#5 TAATAAACATATTTCAAATGTG-------------------------------------- 114 ********************** consensus_10063#0 TAAAATGGTGTAATAATAATATCGTGTAAAATTAGTAAACGCTTGCTTGCTTTTTTATTC 599 consensus_10063#1 TAAAATGGTGTAATAATAATATCGTGTAAAATTAGT------------------------ 493 consensus_10063#3 ------------------------------------------------------------ consensus_10063#4 ------------------------------------------------------------ consensus_10063#2 TGCCGG------------------------------------------------------ 488 consensus_10063#5 ------------------------------------------------------------ consensus_10063#0 AGGAG 604 consensus_10063#1 ----- consensus_10063#3 ----- consensus_10063#4 ----- consensus_10063#2 ----- consensus_10063#5 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||