cluster # 1019

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Anopheles gambiae
cluster # 1019 cluster # 1019 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1019#0 length = 497 sequences # 1

consensus_1019#1 length = 401 sequences # 1

consensusID : consensus_1019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [ATCCGCAGCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCCTGCCAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACAGGGTACCGGAACAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTGCGTTGGCTTCGCCGGTGTTTGTGTGTGT]

[+] EMBL AGA285300            [ATCCGCAGCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCCTGCCAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACAGGGTACCGGAACAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTGCGTTGGCTTCGCCGGTGTTTGTGTGTGT]




>consensus_1019#0
ATCCGCAGCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCCTGCCAG
TGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGA
AAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGA
ATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCG
TGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTAC
AAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAAT
TTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACAGGGTACCGGAA
CAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTGCGTTGGCTTCG
CCGGTGTTTGTGTGTGT

consensusID : consensus_1019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCACACGCTCTGTCTAGCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA]

[+] EMBL AGA282746            [CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCACACGCTCTGTCTAGCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA]




>consensus_1019#1
CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCACACGCTCTGTCTA
GCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAA
AACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAA
GGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTA
CACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCA
GAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTT
GTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1019#0      -----ATCCGCA-GCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCC 54
consensus_1019#1      CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCA-CACGCTCTGTCT 59
                            *  **  ** *   ** * * * **  **    * * ****   * *   * * 

consensus_1019#0      TGCC-----AGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAA 109
consensus_1019#1      AGCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAA 119
                       **      ***************************************************

consensus_1019#0      AAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGA 169
consensus_1019#1      AAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGA 179
                      ************************************************************

consensus_1019#0      AGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTT 229
consensus_1019#1      AGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTT 239
                      ************************************************************

consensus_1019#0      ACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGC 289
consensus_1019#1      ACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGC 299
                      ************************************************************

consensus_1019#0      AGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATT 349
consensus_1019#1      AGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATT 359
                      ************************************************************

consensus_1019#0      TGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACA 409
consensus_1019#1      TGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA------------------ 401
                      ******************************************                  

consensus_1019#0      GGGTACCGGAACAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTG 469
consensus_1019#1      ------------------------------------------------------------
                                                                                  

consensus_1019#0      CGTTGGCTTCGCCGGTGTTTGTGTGTGT 497
consensus_1019#1      ----------------------------