cluster # 1049

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Anopheles gambiae
cluster # 1049 cluster # 1049 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1049#0 length = 796 sequences # 1

consensus_1049#1 length = 684 sequences # 1

consensusID : consensus_1049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence

                              [CCGCCCACGCGTCCGCCTGAAGTGGTCAGTGTAGTGTGTTAGTTACGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACGCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGCCAAACTCCCTGCAAGTGCGAACATCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTGGCCAATCTCCCCTGCAGTGTGTCCAGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCCCACTACGCCCTGTCCTCCGGGGTACGAACAACCGTCCGGT]

[+] EMBL BM617794             [CCGCCCACGCGTCCGCCTGAAGTGGTCAGTGTAGTGTGTTAGTTACGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACGCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGCCAAACTCCCTGCAAGTGCGAACATCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTGGCCAATCTCCCCTGCAGTGTGTCCAGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCCCACTACGCCCTGTCCTCCGGGGTACGAACAACCGTCCGGT]




>consensus_1049#0
CCGCCCACGCGTCCGCCTGAAGTGGTCAGTGTAGTGTGTTAGTTACGTGAAGATGAAGAC
GGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCC
TTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAAC
GTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTG
CGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCC
GGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTG
TGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTAC
GCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTG
CAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTG
CCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTG
CCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGCCAAACTCCCTGCAAGTGCGAACA
TCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTGGCCAATCTCCCCTGCAGTGTGTCC
AGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCCCACTACGCCCTGTCCTCCGGGGTA
CGAACAACCGTCCGGT

consensusID : consensus_1049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTTACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGTCAAACTCCCCTGCAAGTGTGAGCA]

[+] EMBL BM614823             [CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTTACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGTCAAACTCCCCTGCAAGTGTGAGCA]




>consensus_1049#1
CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTT
ACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGA
TGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCT
TCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAG
ATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGC
TGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTG
TATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTAC
CATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCG
TGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCG
TGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCT
TGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGT
CAAACTCCCCTGCAAGTGTGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1049#0      --------------CCGCCCACGCGT------CCGCCTGAAGTGGTCAGTGTAGTGTGTT 40
consensus_1049#1      CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTT 60
                                     *  * * ****         *************************

consensus_1049#0      AGTTAC---GTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGA 97
consensus_1049#1      ACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGA 120
                      *  ***   ***************************************************

consensus_1049#0      TGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCT 157
consensus_1049#1      TGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCT 180
                      ************************************************************

consensus_1049#0      TCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAG 217
consensus_1049#1      TCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAG 240
                      ************************************************************

consensus_1049#0      ATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGC 277
consensus_1049#1      ATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGC 300
                      ************************************** *********************

consensus_1049#0      TGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTG 337
consensus_1049#1      TGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTG 360
                      ************************************************************

consensus_1049#0      TATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTAC 397
consensus_1049#1      TATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTAC 420
                      ************************************************************

consensus_1049#0      CATCCTGCTCCCTGCGAAACTACGCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCG 457
consensus_1049#1      CATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCG 480
                      *********************** ************************************

consensus_1049#0      TGCGGCTGTGGCCAAACTCCCTGCAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCG 517
consensus_1049#1      TGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCG 540
                      ***************************** ******************************

consensus_1049#0      TGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCT 577
consensus_1049#1      TGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCT 600
                      ************************************************************

consensus_1049#0      TGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGC 637
consensus_1049#1      TGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGT 660
                      *********************************************************** 

consensus_1049#0      CAAACTCCC-TGCAAGTGCGAACATCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTG 696
consensus_1049#1      CAAACTCCCCTGCAAGTGTGAGCA------------------------------------ 684
                      ********* ******** ** **                                    

consensus_1049#0      GCCAATCTCCCCTGCAGTGTGTCCAGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCC 756
consensus_1049#1      ------------------------------------------------------------
                                                                                  

consensus_1049#0      CACTACGCCCTGTCCTCCGGGGTACGAACAACCGTCCGGT 796
consensus_1049#1      ----------------------------------------