cluster # 1051

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Anopheles gambiae
cluster # 1051 cluster # 1051 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1051#0 length = 540 sequences # 1

consensus_1051#1 length = 526 sequences # 1

consensusID : consensus_1051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCAGTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGAAATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAATATCAGCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACGAATATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACCTATCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAAGACGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAGTGCAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAAAACGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATCCACACCAAGGCCCACA]

[+] EMBL AL933690             [CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCAGTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGAAATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAATATCAGCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACGAATATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACCTATCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAAGACGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAGTGCAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAAAACGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATCCACACCAAGGCCCACA]




>consensus_1051#0
CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCA
GTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGA
AATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAAT
ATCAGCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACGAA
TATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACCTA
TCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAAGA
CGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAGTG
CAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAAAA
CGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATCCACACCAAGGCCCACA

consensusID : consensus_1051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [CCGAGTGAATGCAGCCGCTGCGCAGGATAAATCTAAAAGAGGCTTACAACCGAACCGCCCTAAAACGCAACAAGTTGGTGAGTCGAAGGTAAGCAAGGCGTCGGTGCAGGTTGCGAGGGCAAAGGTTACAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGTACTAAAGCTGTCCGCATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAATAATGGAAATAGGTTTTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTGAATGGAAATAAGAGTACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAGGCGATTGGTGAAAATTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTCATCGTACTTCCCTAAGAATCCTGCCGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAAGATGCGGCTGTACCACGGCAAGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGATCTACTC]

[+] EMBL BM585753             [CCGAGTGAATGCAGCCGCTGCGCAGGATAAATCTAAAAGAGGCTTACAACCGAACCGCCCTAAAACGCAACAAGTTGGTGAGTCGAAGGTAAGCAAGGCGTCGGTGCAGGTTGCGAGGGCAAAGGTTACAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGTACTAAAGCTGTCCGCATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAATAATGGAAATAGGTTTTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTGAATGGAAATAAGAGTACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAGGCGATTGGTGAAAATTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTCATCGTACTTCCCTAAGAATCCTGCCGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAAGATGCGGCTGTACCACGGCAAGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGATCTACTC]




>consensus_1051#1
CCGAGTGAATGCAGCCGCTGCGCAGGATAAATCTAAAAGAGGCTTACAACCGAACCGCCC
TAAAACGCAACAAGTTGGTGAGTCGAAGGTAAGCAAGGCGTCGGTGCAGGTTGCGAGGGC
AAAGGTTACAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGTACTAAAGCTGTCCG
CATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAATAATGGAAATAGGTT
TTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTGAATGGAAATAAGAG
TACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAGGCGATTGGTGAAAA
TTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTCATCGTACTTCCCTAAGAATCCTGC
CGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAAGATGCGGCTGTACCACGGCA
AGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGATCTACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1051#0      CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCA 60
consensus_1051#1      CCGAGTGAATGCAGCCGCTGCGCAGGATAAATC------TAAAAGAGGCTTA--CAACCG 52
                      *****   * *   * ****  ** *  *  *        ***  *  *     ** ** 

consensus_1051#0      GTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGA 120
consensus_1051#1      AACCGCCCTAAAACGCAACAAGTTGGT-GAGTCGAAGGTAAGCAAGGCGTCGGTGC---A 108
                         **  ***     *   *    **  *   ** ** * * ****     *  **   *

consensus_1051#0      AATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAAT 180
consensus_1051#1      GGTTGCGAGGGCAAAGGTTA--CAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGT 166
                        * * **  **  * *  *  *  * ***  *          ** ** **  *     *

consensus_1051#0      ATCA--GCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACG 238
consensus_1051#1      ACTAAAGCTGTCCGCATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAAT 226
                      *  *  ** * * *  *  *    * *  *      ** *     ** *   * ****  

consensus_1051#0      AATATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACC 298
consensus_1051#1      AATGGAAATAGGTTTTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTG 286
                      ***   *    *  *    *  *  *  * * **  **     ** **   *   *    

consensus_1051#0      TATCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAA 358
consensus_1051#1      AATGGAAATAAGAGTACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAG 346
                       **  * **  *        *   ***     ***** * *    *** **  **   * 

consensus_1051#0      GACGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAG 418
consensus_1051#1      GC--GATTGGTGAAAATTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTC----ATCG 400
                      *   *** *  *  *  * **  *       ****   *  ***   *   *    *  *

consensus_1051#0      TGCAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAA 478
consensus_1051#1      TACTTCCCTAAGAATCCTGCCGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAA 460
                      * *   * **        ** * * * *    ** *  **   ****** * *   * **

consensus_1051#0      AA--CGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATC-CACACCAAGGC 535
consensus_1051#1      GATGCGGCTGTACCACGGCAAGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGAT 520
                       *  **     *   * *  *    *  **  *    *      * ** * **    *  

consensus_1051#0      CCACA- 540
consensus_1051#1      CTACTC 526
                      * **