cluster # 1063

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Anopheles gambiae
cluster # 1063 cluster # 1063 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1063#0 length = 530 sequences # 1

consensus_1063#1 length = 413 sequences # 1

consensusID : consensus_1063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [CCGCCCACGCGTCCGCGTGATTATAACCCGCTCTCAATCGTCTTATTCTACTTTGAAGCACGGAAATTAATCCAGATTGTTCAAAATTAATAACAAGCTGAACGTGCTGTGAATGTGTTTTACTGCTTGCACCAGCTATTTCTATGATGACATAGGAATGCTTTTGGAATGAAGCGGCGCATCATCATAGGGCGCAAGTACATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACTAGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGCAATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCAAAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCGGCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAGCCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTG]

[+] EMBL BM603473             [CCGCCCACGCGTCCGCGTGATTATAACCCGCTCTCAATCGTCTTATTCTACTTTGAAGCACGGAAATTAATCCAGATTGTTCAAAATTAATAACAAGCTGAACGTGCTGTGAATGTGTTTTACTGCTTGCACCAGCTATTTCTATGATGACATAGGAATGCTTTTGGAATGAAGCGGCGCATCATCATAGGGCGCAAGTACATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACTAGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGCAATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCAAAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCGGCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAGCCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTG]




>consensus_1063#0
CCGCCCACGCGTCCGCGTGATTATAACCCGCTCTCAATCGTCTTATTCTACTTTGAAGCA
CGGAAATTAATCCAGATTGTTCAAAATTAATAACAAGCTGAACGTGCTGTGAATGTGTTT
TACTGCTTGCACCAGCTATTTCTATGATGACATAGGAATGCTTTTGGAATGAAGCGGCGC
ATCATCATAGGGCGCAAGTACATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACT
AGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGC
AATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCA
AAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCG
GCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAG
CCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTG

consensusID : consensus_1063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [ACGCCCGAGGATTTTTGGAATGAAGCGGCGCATCATCATAGGGCGCAAGTAGATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACTAGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGCAATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCAAAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCGGCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAGCCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTGTGTATGTGTGTGTTTTTTTTCTATTTGCTCCA]

[+] EMBL AL933694             [ACGCCCGAGGATTTTTGGAATGAAGCGGCGCATCATCATAGGGCGCAAGTAGATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACTAGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGCAATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCAAAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCGGCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAGCCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTGTGTATGTGTGTGTTTTTTTTCTATTTGCTCCA]




>consensus_1063#1
ACGCCCGAGGATTTTTGGAATGAAGCGGCGCATCATCATAGGGCGCAAGTAGATCATCAG
AACAGTTGCCATGGGCAAGGGAATGCATACTAGATCATACCATGCATCGATCGAAGCAGA
ACAGCATAGCTACATAGAGCTGCACCATTGCAATCCAGTGTCTCTACAACAATAGCTCAG
CAACGAACAATTCCAGTGCAGAGACCCGGCAAAACGTGCTATATGGCATAACGATCAAAC
GAAAAACAAACAATCTGAACCCTTCTGCTCGGCGCGGTGTTGAGGAAAACGTCCGGGAAA
GATGTGGTAACCACCGGTGTGTTCTTATCAGCCCTACTCGCCCTGAGTCTGATTGTACGC
CTATGTGGGCTTGAGTAAGTGTGTATGTGTGTGTTTTTTTTCTATTTGCTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1063#0      CCGCCCACGCGTCCGCGTGATTATAACCCGCTCTCAATCGTCTTATTCTACTTTGAAGCA 60
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      CGGAAATTAATCCAGATTGTTCAAAATTAATAACAAGCTGAACGTGCTGTGAATGTGTTT 120
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      TACTGCTTGCACCAGCTATTTCTATGATGACATAGGAATGCTTTTGGAATGAAGCGGCGC 180
consensus_1063#1      -----------------------------ACGCCCGAGGATTTTTGGAATGAAGCGGCGC 31
                                                   **    **    *******************

consensus_1063#0      ATCATCATAGGGCGCAAGTACATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACT 240
consensus_1063#1      ATCATCATAGGGCGCAAGTAGATCATCAGAACAGTTGCCATGGGCAAGGGAATGCATACT 91
                      ******************** ***************************************

consensus_1063#0      AGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGC 300
consensus_1063#1      AGATCATACCATGCATCGATCGAAGCAGAACAGCATAGCTACATAGAGCTGCACCATTGC 151
                      ************************************************************

consensus_1063#0      AATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCA 360
consensus_1063#1      AATCCAGTGTCTCTACAACAATAGCTCAGCAACGAACAATTCCAGTGCAGAGACCCGGCA 211
                      ************************************************************

consensus_1063#0      AAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCG 420
consensus_1063#1      AAACGTGCTATATGGCATAACGATCAAACGAAAAACAAACAATCTGAACCCTTCTGCTCG 271
                      ************************************************************

consensus_1063#0      GCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAG 480
consensus_1063#1      GCGCGGTGTTGAGGAAAACGTCCGGGAAAGATGTGGTAACCACCGGTGTGTTCTTATCAG 331
                      ************************************************************

consensus_1063#0      CCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTG---------- 530
consensus_1063#1      CCCTACTCGCCCTGAGTCTGATTGTACGCCTATGTGGGCTTGAGTAAGTGTGTATGTGTG 391
                      **************************************************          

consensus_1063#0      ----------------------
consensus_1063#1      TGTTTTTTTTCTATTTGCTCCA 413