These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence [GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAATCACTTCGGAGCAGATTAGCTTAAACTTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTTGCTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGCCTTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTGGCAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGGTGGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAAAAATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAGAGCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNGGACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACCCTGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTGTGAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATATGAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGTGGTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCGTGGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAACAATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACAACATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTNGGGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCACATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTCAAACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAACCCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGGTCCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATTCTCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTGACGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANACCCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGCCAACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG] [+] EMBL AL931963 [GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAATCACTTCGGAGCAGATTAGCTTAAACTTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTTGCTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGCCTTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTGGCAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGGTGGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAAAAATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAGAGCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNGGACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACCCTGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTGTGAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATATGAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGTGGTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCGTGGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAACAATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACAACATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTNGGGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCACATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTCAAACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAACCCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGGTCCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATTCTCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTGACGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANACCCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGCCAACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG] consensusID : consensus_1066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [GTGGAATTCACTTCGGAGCAGATTAGCTTAAACTTCCTGTCCCCCTCGTTCGWCGTCGAGTGCACTTGTGTCGCTTTCGATATTTTGCTTCCCAGTCCCGTGGGACCGTGTGTGAGCTCGATTGGGCCTGCAGTTTCTCGTTCCCGTAGTCAAGCCGCGTCGGCAATACTTACCACCCTAATCTGCGTAATAAAAGAGGGACTGGTGGTGTGAACGCATCGATATGCCTAACGCTGACGTGT] [+] EMBL AGA283208 [GTGGAATTCACTTCGGAGCAGATTAGCTTAAACTTCCTGTCCCCCTCGTTCGWCGTCGAGTGCACTTGTGTCGCTTTCGATATTTTGCTTCCCAGTCCCGTGGGACCGTGTGTGAGCTCGATTGGGCCTGCAGTTTCTCGTTCCCGTAGTCAAGCCGCGTCGGCAATACTTACCACCCTAATCTGCGTAATAAAAGAGGGACTGGTGGTGTGAACGCATCGATATGCCTAACGCTGACGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1066#0 GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAAT-CACTTCGGAGCAGATTAGCTTAAA 59 consensus_1066#1 ----------------------------GTGGAATTCACTTCGGAGCAGATTAGCTTAAA 32 ******* ************************ consensus_1066#0 CTTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTT 119 consensus_1066#1 CTTCCTG-TCCCCCTCGTTCGWCGTCGAGTGCACTTG--TGTC-GCTTTCGATA--TTTT 86 ******* ************* *************** **** ********** **** consensus_1066#0 GCTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGC 179 consensus_1066#1 GCTTCCC---AGTCCCGTGG------GACCGTGTGT-----GAGCT--CGATTGGG---- 126 **** ** ****** *** *** **** *** ***** ** consensus_1066#0 CTTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTG 239 consensus_1066#1 CCTGCAG-----TTTCTC---GTTCCCGTAGT------CAAGCCGCGTCGGCAATACTTA 172 * *** ** *** ****** * ** *** * *** * * consensus_1066#0 GCAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGG 299 consensus_1066#1 CCACCCTAATCTGCGTAATAAA----AGAGGGACTGGTGGT-------GTGAACGCATCG 221 ** *** ** * *** * *** *** ** *** * consensus_1066#0 TGGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAA 359 consensus_1066#1 ATATGCCTAACGCTGACGTGT--------------------------------------- 242 *** ** ** consensus_1066#0 AAATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAG 419 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 AGCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNG 479 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 GACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACC 539 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CTGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTG 599 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 TGAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATA 659 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 TGAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGT 719 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 GGTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCG 779 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 TGGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAA 839 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CAATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACA 899 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 ACATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTN 959 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 GGGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCA 1019 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTC 1079 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 AAACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAA 1139 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CCCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGG 1199 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 TCCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATT 1259 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CTCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTG 1319 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 ACGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANA 1379 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CCCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGC 1439 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CAACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG 1481 consensus_1066#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||