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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence
[CAGGCCAGAATTCGGCACGNGTGACGCACTGTGTCAGCGAGCAGGAGCGCACGCGGCAAGGTGGTGCAGCAGGTGGCGCCAAGGGTGCTGCTTCCGCTGTCGCTGAACGGCACGGCCAACGGTGAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCAGCCATCAATCCGGAGGTCGCGTTCCCGGGCCAGCGCAATCTGGAGGTGATCCGGCCTGCTAATGAACCAGCTCCATCCGGACTACACGTCGCTGGAAAACTTCGAAGCACGTGATGGCACTGTGCAATCTGGCCTCGATGAACGAATCCACCCGGCAGCGCATCCTGAAGGAGCAGGGCATGGTGAAGTTCGAATCGTACATGGGCGAGGACCATATGATGCTGCGTCGAGCCGCCACCCAGGTGATGTGCAACATGGTCCAGTCGCCGGACGCGGTGAAGCTGTGCGAAAAGGAGAACGATCGGGTAAAGATGCTGGCGCTGCTGTGCGAGGAAGAGGACGAGGATACGGCGCTGGCGGCATCGGGTGCACTCGCCTATCTGACCTCCGTGTCGGAGCGGTGCTGCGAGAAGATGTTCGAACCGATCGCGTGGCTGGACGTGTTCCACACGTTGGTGGCGAAACCCGAGGCGCCGGTGTGCAGCATCGCGGCACGGTGATCATTCGCAACATCCATCAAGACGAACAAGCAGCTNGCGGTCGAAAGCTAGGTTCCGGACACCGGATTCTNGTGCAGGATNCTGNAACGGNGTTACCGGCAANGGTTAACGAACGAAGNAAGCGCGCGCGAAAGGGCNAATTCGAGTGTTGCCCAGGGAGATGGNCTTGAAACCTTGGCGNA]
[+] EMBL BX468466 [CAGGCCAGAATTCGGCACGNGTGACGCACTGTGTCAGCGAGCAGGAGCGCACGCGGCAAGGTGGTGCAGCAGGTGGCGCCAAGGGTGCTGCTTCCGCTGTCGCTGAACGGCACGGCCAACGGTGAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCAGCCATCAATCCGGAGGTCGCGTTCCCGGGCCAGCGCAATCTGGAGGTGATCCGGCCTGCTAATGAACCAGCTCCATCCGGACTACACGTCGCTGGAAAACTTCGAAGCACGTGATGGCACTGTGCAATCTGGCCTCGATGAACGAATCCACCCGGCAGCGCATCCTGAAGGAGCAGGGCATGGTGAAGTTCGAATCGTACATGGGCGAGGACCATATGATGCTGCGTCGAGCCGCCACCCAGGTGATGTGCAACATGGTCCAGTCGCCGGACGCGGTGAAGCTGTGCGAAAAGGAGAACGATCGGGTAAAGATGCTGGCGCTGCTGTGCGAGGAAGAGGACGAGGATACGGCGCTGGCGGCATCGGGTGCACTCGCCTATCTGACCTCCGTGTCGGAGCGGTGCTGCGAGAAGATGTTCGAACCGATCGCGTGGCTGGACGTGTTCCACACGTTGGTGGCGAAACCCGAGGCGCCGGTGTGCAGCATCGCGGCACGGTGATCATTCGCAACATCCATCAAGACGAACAAGCAGCTNGCGGTCGAAAGCTAGGTTCCGGACACCGGATTCTNGTGCAGGATNCTGNAACGGNGTTACCGGCAANGGTTAACGAACGAAGNAAGCGCGCGCGAAAGGGCNAATTCGAGTGTTGCCCAGGGAGATGGNCTTGAAACCTTGGCGNA]
consensusID : consensus_1079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[GCNNCGCGTGTTCAACGCACTGTGCAGCGAGCAGGAGGCACGCGGCAAGGTGGTGCAGCAGGGTGGCGCCAAGGTGCTGCTCTCCGCTGTCGCTGAACGGCACGGCCAACGGGNAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCACCATCAATCCGNNGGTCGCGTNTCCCGGGCCAGACGCAATCTGGAGGTGATCCGGCCGCTAATGAACCAGCTCCATCCGGNACTACACGTCGCTGGNAAAACTTCNGAAGCACTGATGGCACTGTGCAATCTGGCCTCGNATGNAACGAATCCACCCGGCAGCGCATCCTGAA]
[+] EMBL BX619817 [GCNNCGCGTGTTCAACGCACTGTGCAGCGAGCAGGAGGCACGCGGCAAGGTGGTGCAGCAGGGTGGCGCCAAGGTGCTGCTCTCCGCTGTCGCTGAACGGCACGGCCAACGGGNAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCACCATCAATCCGNNGGTCGCGTNTCCCGGGCCAGACGCAATCTGGAGGTGATCCGGCCGCTAATGAACCAGCTCCATCCGGNACTACACGTCGCTGGNAAAACTTCNGAAGCACTGATGGCACTGTGCAATCTGGCCTCGNATGNAACGAATCCACCCGGCAGCGCATCCTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1079#0 CAGGCCAGAATTCGGCACGNGTGACGCACTGTGTCAGCGAGCAGGAGCGCACGCGGCAAG 60
consensus_1079#1 ---------GCNNCGCGTGTTCAACGCACTGTG-CAGCGAGCAGGAG-GCACGCGGCAAG 49
** * ********** ************* ************
consensus_1079#0 GTGGTGCAGCAGG-TGGCGCCAAGGGTGCTGCT-TCCGCTGTCGCTGAACGGCACGGCCA 118
consensus_1079#1 GTGGTGCAGCAGGGTGGCGCCAAGG-TGCTGCTCTCCGCTGTCGCTGAACGGCACGGCCA 108
************* *********** ******* **************************
consensus_1079#0 ACGGTGAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCAGCCATCAATCCGGA 178
consensus_1079#1 ACGGGNAAGCGTCATGCGGCGCAGGCACTGTCCCGCATCGGCATCA-CCATCAATCCGNN 167
**** **************************************** ***********
consensus_1079#0 GGTCGCGTT-CCCGGGCCAG-CGCAATCTGGAGGTGATCCGGCCTGCTAATGAACCAGCT 236
consensus_1079#1 GGTCGCGTNTCCCGGGCCAGACGCAATCTGGAGGTGATCCGGCC-GCTAATGAACCAGCT 226
******** ********** *********************** ***************
consensus_1079#0 CCATCCGGA-CTACACGTCGCTGGAAAA--CTTCGAAGCACGTGATGGCACTGTGCAATC 293
consensus_1079#1 CCATCCGGNACTACACGTCGCTGGNAAAACTTCNGAAGCAC-TGATGGCACTGTGCAATC 285
******** ************** *** * ******* ******************
consensus_1079#0 TGGCCTCGAT--GAACGAATCCACCCGGCAGCGCATCCTGAAGGAGCAGGGCATGGTGAA 351
consensus_1079#1 TGGCCTCGNATGNAACGAATCCACCCGGCAGCGCATCCTGAA------------------ 327
******** *****************************
consensus_1079#0 GTTCGAATCGTACATGGGCGAGGACCATATGATGCTGCGTCGAGCCGCCACCCAGGTGAT 411
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 GTGCAACATGGTCCAGTCGCCGGACGCGGTGAAGCTGTGCGAAAAGGAGAACGATCGGGT 471
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 AAAGATGCTGGCGCTGCTGTGCGAGGAAGAGGACGAGGATACGGCGCTGGCGGCATCGGG 531
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 TGCACTCGCCTATCTGACCTCCGTGTCGGAGCGGTGCTGCGAGAAGATGTTCGAACCGAT 591
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 CGCGTGGCTGGACGTGTTCCACACGTTGGTGGCGAAACCCGAGGCGCCGGTGTGCAGCAT 651
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 CGCGGCACGGTGATCATTCGCAACATCCATCAAGACGAACAAGCAGCTNGCGGTCGAAAG 711
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 CTAGGTTCCGGACACCGGATTCTNGTGCAGGATNCTGNAACGGNGTTACCGGCAANGGTT 771
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 AACGAACGAAGNAAGCGCGCGCGAAAGGGCNAATTCGAGTGTTGCCCAGGGAGATGGNCT 831
consensus_1079#1 ------------------------------------------------------------
consensus_1079#0 TGAAACCTTGGCGNA 846
consensus_1079#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||