cluster # 1083

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Anopheles gambiae
cluster # 1083 cluster # 1083 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1083#0 length = 665 sequences # 1

consensus_1083#1 length = 485 sequences # 1

consensusID : consensus_1083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGCGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAACAGCAGCAGCCGCAGCAGCAGCAACGTCCCTGGGAGTCGCTGACGCAGGTGTTCCAGCAGGCTCCGGCCGCGCAGGCCCAACATCAACATCCGGCCTCCTCGCTGATGGTCGACATTAACCAGGTGCCGGTCAGTCTGCCGCTCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCTCCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAACCGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGCCGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGGCACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGTTGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGACGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGATACTGCACCGGACGGTTCGCCGGGCGATCACGGCACCGCGGCGCAACTTTGCCCGCTTCCACTGG]

[+] EMBL BM614408             [CCGCGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAACAGCAGCAGCCGCAGCAGCAGCAACGTCCCTGGGAGTCGCTGACGCAGGTGTTCCAGCAGGCTCCGGCCGCGCAGGCCCAACATCAACATCCGGCCTCCTCGCTGATGGTCGACATTAACCAGGTGCCGGTCAGTCTGCCGCTCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCTCCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAACCGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGCCGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGGCACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGTTGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGACGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGATACTGCACCGGACGGTTCGCCGGGCGATCACGGCACCGCGGCGCAACTTTGCCCGCTTCCACTGG]




>consensus_1083#0
CCGCGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAACAGCAGCAGCCGCAGCAGCAGC
AACGTCCCTGGGAGTCGCTGACGCAGGTGTTCCAGCAGGCTCCGGCCGCGCAGGCCCAAC
ATCAACATCCGGCCTCCTCGCTGATGGTCGACATTAACCAGGTGCCGGTCAGTCTGCCGC
TCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCT
CCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAAC
CGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGC
CGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGG
CACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGT
TGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGA
CGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGA
TACTGCACCGGACGGTTCGCCGGGCGATCACGGCACCGCGGCGCAACTTTGCCCGCTTCC
ACTGG

consensusID : consensus_1083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CCGCGGACGCGTGGGCGGTCAGTCTGCCGCTCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCTCCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAACCGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGCCGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGGCACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGTTGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGACGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGATACTGCACCGGACGGTTCGCCGGGCGATCACGGCA]

[+] EMBL BM650750             [CCGCGGACGCGTGGGCGGTCAGTCTGCCGCTCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCTCCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAACCGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGCCGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGGCACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGTTGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGACGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGATACTGCACCGGACGGTTCGCCGGGCGATCACGGCA]




>consensus_1083#1
CCGCGGACGCGTGGGCGGTCAGTCTGCCGCTCGGCCATCACCACGAGCAGCTGTGGACGT
ACTCGGCCGGGCCGCACATTTCAATCTGCTCCGGGCACCCGGCCGCACCACACTTGCCAC
CGTGTCAGGTCCATGGCGTGTACTCGCAACCGTTTGCACAGACCTGCGGTATTGGCGGGC
ATTTCGGGGGCTTTGCCTCGTCCGCTGGGCCGGCACTGGCCGTTCCGCATCCACCACCGC
ACCAAGCGCACTACCAGCATCCCCATCTGGCACAGCAGCGCACCGACGGCTTGACGCTGG
ACGGGTTGGAGCATGCCGGCGGGTCACCGTTGCACCTGTCGCCGCTCGCCACGCACGCGC
ACCATCTGCACGGTGCCTCGCCGCAGATGACGCAGCTGACCGCGGCGGCCCAACCGATCT
ACATTTCCACCGAGGGTCGCAACTATGAGATACTGCACCGGACGGTTCGCCGGGCGATCA
CGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1083#0      CCGCGCAGCAGCAGCAGCAGCAGCCTCAGCAGCAGCAACAGCAGCAGCCGCAGCAGCAGC 60
consensus_1083#1      ------------------------------------------------------------
                                                                                  

consensus_1083#0      AACGTCCCTGGGAGTCGCTGACGCAGGTGTTCCAGCAGGCTCCGGCCGCGCAGGCCCAAC 120
consensus_1083#1      ------------------------------------------------------------
                                                                                  

consensus_1083#0      ATCAACATCCGGCCTCCTCGCTGATGGTCGACATTAACCAGGTGCCGGTCAGTCTGCCGC 180
consensus_1083#1      ------------------------------CCGCGGACGCGTGGGCGGTCAGTCTGCCGC 30
                                                     *    **  *  * ***************

consensus_1083#0      TCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCT 240
consensus_1083#1      TCGGCCATCACCACGAGCAGCTGTGGACGTACTCGGCCGGGCCGCACATTTCAATCTGCT 90
                      ************************************************************

consensus_1083#0      CCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAAC 300
consensus_1083#1      CCGGGCACCCGGCCGCACCACACTTGCCACCGTGTCAGGTCCATGGCGTGTACTCGCAAC 150
                      ************************************************************

consensus_1083#0      CGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGC 360
consensus_1083#1      CGTTTGCACAGACCTGCGGTATTGGCGGGCATTTCGGGGGCTTTGCCTCGTCCGCTGGGC 210
                      ************************************************************

consensus_1083#0      CGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGG 420
consensus_1083#1      CGGCACTGGCCGTTCCGCATCCACCACCGCACCAAGCGCACTACCAGCATCCCCATCTGG 270
                      ************************************************************

consensus_1083#0      CACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGT 480
consensus_1083#1      CACAGCAGCGCACCGACGGCTTGACGCTGGACGGGTTGGAGCATGCCGGCGGGTCACCGT 330
                      ************************************************************

consensus_1083#0      TGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGA 540
consensus_1083#1      TGCACCTGTCGCCGCTCGCCACGCACGCGCACCATCTGCACGGTGCCTCGCCGCAGATGA 390
                      ************************************************************

consensus_1083#0      CGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGA 600
consensus_1083#1      CGCAGCTGACCGCGGCGGCCCAACCGATCTACATTTCCACCGAGGGTCGCAACTATGAGA 450
                      ************************************************************

consensus_1083#0      TACTGCACCGGACGGTTCGCCGGGCGATCACGGCACCGCGGCGCAACTTTGCCCGCTTCC 660
consensus_1083#1      TACTGCACCGGACGGTTCGCCGGGCGATCACGGCA------------------------- 485
                      ***********************************                         

consensus_1083#0      ACTGG 665
consensus_1083#1      -----