cluster # 1087

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Anopheles gambiae
cluster # 1087 cluster # 1087 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1087#0 length = 650 sequences # 1

consensus_1087#1 length = 630 sequences # 1

consensusID : consensus_1087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [CCGGTCCCGCAAAAAAGGTGTGTGCACTGCCCTGCGGAGTAGTGAGTCTCTTTTTCGTCTCTTCCCCTCGAGGCAACGATAGAAAACGGTGCTCGGACGTGTGAAAAATCACAGTCAAAGTGGTTCGCTCTGCTTCCCGCTGGATTCCTTTCGTTGCGTGTCGTGCCGTGAGGATCCAATCGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAAAATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTTTTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCACTCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGCGTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCGCACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGTGCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCCCCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCA]

[+] EMBL BM580413             [CCGGTCCCGCAAAAAAGGTGTGTGCACTGCCCTGCGGAGTAGTGAGTCTCTTTTTCGTCTCTTCCCCTCGAGGCAACGATAGAAAACGGTGCTCGGACGTGTGAAAAATCACAGTCAAAGTGGTTCGCTCTGCTTCCCGCTGGATTCCTTTCGTTGCGTGTCGTGCCGTGAGGATCCAATCGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAAAATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTTTTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCACTCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGCGTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCGCACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGTGCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCCCCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCA]




>consensus_1087#0
CCGGTCCCGCAAAAAAGGTGTGTGCACTGCCCTGCGGAGTAGTGAGTCTCTTTTTCGTCT
CTTCCCCTCGAGGCAACGATAGAAAACGGTGCTCGGACGTGTGAAAAATCACAGTCAAAG
TGGTTCGCTCTGCTTCCCGCTGGATTCCTTTCGTTGCGTGTCGTGCCGTGAGGATCCAAT
CGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAA
AATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTT
TTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCAC
TCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGC
GTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCG
CACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGT
GCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCC
CCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCA

consensusID : consensus_1087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CCGCCCACGCGTCCGGTGCGTTGTAAACAGAAGTGTGCACAGCAAAGATCCAATCGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAAAATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTTTTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCACTCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGCGTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCGCACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGTGCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCCCCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCAATCGCATCGTATGCGTGTACGTTTGCTTGAGAGCGTTAGAAGAGCAGTGTGTGTGTACGTGTGTGTGTGTCATCGTAATGTGATGGAACTGTTGCGCGTTGTGTCA]

[+] EMBL BM623075             [CCGCCCACGCGTCCGGTGCGTTGTAAACAGAAGTGTGCACAGCAAAGATCCAATCGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAAAATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTTTTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCACTCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGCGTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCGCACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGTGCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCCCCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCAATCGCATCGTATGCGTGTACGTTTGCTTGAGAGCGTTAGAAGAGCAGTGTGTGTGTACGTGTGTGTGTGTCATCGTAATGTGATGGAACTGTTGCGCGTTGTGTCA]




>consensus_1087#1
CCGCCCACGCGTCCGGTGCGTTGTAAACAGAAGTGTGCACAGCAAAGATCCAATCGCCGA
CAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAAAATCAA
CCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTTTTTTTG
GGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCACTCTCCT
GTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGCGTACGC
AATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCGCACGTG
CGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGTGCCTGC
GTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCCCCGCCA
GAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCAATCGCATCGTATGCGT
GTACGTTTGCTTGAGAGCGTTAGAAGAGCAGTGTGTGTGTACGTGTGTGTGTGTCATCGT
AATGTGATGGAACTGTTGCGCGTTGTGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1087#0      CCGGTCCCGCAAAAAAGGTGTGTGCACTGCCCTGCGGAGTAGTGAGTCTCTTTTTCGTCT 60
consensus_1087#1      ------------------------------------------------------------
                                                                                  

consensus_1087#0      CTTCCCCTCGAGGCAACGATAGAAAACGGTGCTCGGACGTGTGAAAAATCACAGTCAAAG 120
consensus_1087#1      ------------------------------------------------------------
                                                                                  

consensus_1087#0      TGGTTCGCTCTGCTTCCCGCTGGATTCCTTTCGTTGCGTGTCGTGCCGTGAGGATCCAAT 180
consensus_1087#1      ----CCGCCCACGCGTCCGGTGCGTTGTAAACAGAA-GTGT-GCACAGCAAAGATCCAAT 54
                           *** *      *** **  **     *     **** *  * *  * ********

consensus_1087#0      CGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAA 240
consensus_1087#1      CGCCGACAGCTCGAGTGATGTAATGAGTGTGTGAAGATTTTCAACCCCACAGCAGAAGAA 114
                      ************************************************************

consensus_1087#0      AATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTT 300
consensus_1087#1      AATCAACCAGCAAGTGAGCGAGAAAACCCCCAGCGGGAACACCGCATCATCGCCGGCTTT 174
                      ************************************************************

consensus_1087#0      TTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCAC 360
consensus_1087#1      TTTTTGGGGTTGTTATTAATAAAACAGCACAACCCCGGTGTGAGGGTTTTCTCCCCCCAC 234
                      ************************************************************

consensus_1087#0      TCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGC 420
consensus_1087#1      TCTCCTGTGTGTGTGTGCGTGTCTGTGTGTATGGTTGCTGGTGAGACGATTGTTTTTCGC 294
                      ************************************************************

consensus_1087#0      GTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCG 480
consensus_1087#1      GTACGCAATCAGCTAAATTCGTTGTCCGTCACCGGGCCGCCCTATCCCCAGGGGTTTGCG 354
                      ************************************************************

consensus_1087#0      CACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGT 540
consensus_1087#1      CACGTGCGTTCTTGTGTGTCAGCCAATGTGTACGTGAGTGTGCGTGTGCCCGTACCGTGT 414
                      ************************************************************

consensus_1087#0      GCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCC 600
consensus_1087#1      GCCTGCGTGTGGATAAAAGAATTGTGGTCCCGAGAATTTTAATCTCCACCAAACCACCCC 474
                      ************************************************************

consensus_1087#0      CCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCA---------- 650
consensus_1087#1      CCGCCAGAAGGTCTAGCAAAAAGGGCTACACCCGAGCAGCAGCAGCCCCAATCGCATCGT 534
                      **************************************************          

consensus_1087#0      ------------------------------------------------------------
consensus_1087#1      ATGCGTGTACGTTTGCTTGAGAGCGTTAGAAGAGCAGTGTGTGTGTACGTGTGTGTGTGT 594
                                                                                  

consensus_1087#0      ------------------------------------
consensus_1087#1      CATCGTAATGTGATGGAACTGTTGCGCGTTGTGTCA 630