cluster # 109

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Anopheles gambiae
cluster # 109 cluster # 109 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_109#0 length = 742 sequences # 1

consensus_109#1 length = 603 sequences # 1

consensusID : consensus_109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTCAGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCGGTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTAGGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAAAGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACATATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACAAACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGTGGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAGATCATGCCGGCGGACACTTGAACNTGTATAAGTG]

[+] EMBL BX468785             [CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTCAGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCGGTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTAGGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAAAGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACATATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACAAACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGTGGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAGATCATGCCGGCGGACACTTGAACNTGTATAAGTG]




>consensus_109#0
CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTC
AGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCG
GTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAG
AAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTA
GGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAA
AGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACA
TATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACA
AACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGT
GGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACA
GAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTG
GCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACT
CCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAGATCATGCCGGCG
GACACTTGAACNTGTATAAGTG

consensusID : consensus_109#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CCGCCCACGCGTCCGGAAGAAAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGATCAAATCGTCTTCTCTTAGGCACTCAAATCAAACTCACACTCACTCTTTCTCGGGCAAACGGAACGAAGAGCACAAGAGCTGGTTTCGATGTAGCGTTTACAGGTAGGGTAGAATATACTGGAGTATACTAGTAGTTCCGGCAACAACTACGGTAGCAACAACAGACAACTTGTGCCAGGCTATATGGGCTGACGCTGTCGATCAGCCGTGTGGCAACAAACTCACCAAACACAACACTACAAACAAACATAAAAACAAACAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCTCCGCTAGAATAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAAGATCATGCCGGCGACACTGAAACTGTTATAAGTGTATTTTGTGTGAGTGTTTGTTCATGAATGTCAACTATCCATAATGTCTATGTTGTGAACCAGAAGCGCATTC]

[+] EMBL BM643516             [CCGCCCACGCGTCCGGAAGAAAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGATCAAATCGTCTTCTCTTAGGCACTCAAATCAAACTCACACTCACTCTTTCTCGGGCAAACGGAACGAAGAGCACAAGAGCTGGTTTCGATGTAGCGTTTACAGGTAGGGTAGAATATACTGGAGTATACTAGTAGTTCCGGCAACAACTACGGTAGCAACAACAGACAACTTGTGCCAGGCTATATGGGCTGACGCTGTCGATCAGCCGTGTGGCAACAAACTCACCAAACACAACACTACAAACAAACATAAAAACAAACAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCTCCGCTAGAATAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAAGATCATGCCGGCGACACTGAAACTGTTATAAGTGTATTTTGTGTGAGTGTTTGTTCATGAATGTCAACTATCCATAATGTCTATGTTGTGAACCAGAAGCGCATTC]




>consensus_109#1
CCGCCCACGCGTCCGGAAGAAAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGG
ATCAAATCGTCTTCTCTTAGGCACTCAAATCAAACTCACACTCACTCTTTCTCGGGCAAA
CGGAACGAAGAGCACAAGAGCTGGTTTCGATGTAGCGTTTACAGGTAGGGTAGAATATAC
TGGAGTATACTAGTAGTTCCGGCAACAACTACGGTAGCAACAACAGACAACTTGTGCCAG
GCTATATGGGCTGACGCTGTCGATCAGCCGTGTGGCAACAAACTCACCAAACACAACACT
ACAAACAAACATAAAAACAAACAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTG
TATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTC
GCAATCCCTCCGCTAGAATAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTC
GTACGGATCGAAAAAAAGATCATGCCGGCGACACTGAAACTGTTATAAGTGTATTTTGTG
TGAGTGTTTGTTCATGAATGTCAACTATCCATAATGTCTATGTTGTGAACCAGAAGCGCA
TTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_109#0      CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTC 60
consensus_109#1      ------------------------------------------------------------
                                                                                 

consensus_109#0      AGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCG 120
consensus_109#1      ------------------------------------------------------------
                                                                                 

consensus_109#0      GTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAG 180
consensus_109#1      ------------------------------------CCGCCCAC-GCGTCCGGAAGAAAG 23
                                                           **  ** *  *   ***** **

consensus_109#0      AAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTA 240
consensus_109#1      AAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGA--TCAAATCGTCTT---CTCTT 78
                     *************************************   ***** ******   ** * 

consensus_109#0      GGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAA 300
consensus_109#1      AGGCACTCAAATCAAA-CTCACACT-CACTCTTTCTC---GGGCAAA---CGGAACGAAG 130
                      *************** ******** ****  **  *   *******    * **** * 

consensus_109#0      AGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACA 360
consensus_109#1      AGC----ACAAGAGCTGGTTTC--GATGT--AGCGTTT----ACAGGT--AGGGTAGA-A 175
                     **     ***************    ***  *******    **   *   ******* *

consensus_109#0      TATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACA 420
consensus_109#1      TAT-ACTGGAGT-ATA-CTAGTAGTTCC----GGCAA--CAACTACGGTAGCAACAA--- 223
                     *** ******** *** ********* *    *****  ****** ** *    ***   

consensus_109#0      AACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGT 480
consensus_109#1      --CAGACAAC------TTGTGCCAGGCTATATGGGCTGA-CGCTGTCGATCA-GCCGTGT 273
                       ********      ***  *  ************* * ************ *******

consensus_109#0      GGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACA 540
consensus_109#1      GGCAACAAACTCACCAAACACAA-CACTACAAACAAA-CATAAAAACAAACAAA-CAACA 330
                     *********************** ************* ****** ********* *****

consensus_109#0      GAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTG 600
consensus_109#1      GAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTG 390
                     ************************************************************

consensus_109#0      GCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACT 660
consensus_109#1      GCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCTCCGCTAGAA-TAGGTGTAACT 449
                     ************************************** * * ***** ***********

consensus_109#0      CCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAA-GATCATGCCGGC 719
consensus_109#1      CCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAAGATCATGCCGGC 509
                     *********************************************** ************

consensus_109#0      GGACACTTGAACNTGTATAAGTG------------------------------------- 742
consensus_109#1      G-ACACTGAAACTGTTATAAGTGTATTTTGTGTGAGTGTTTGTTCATGAATGTCAACTAT 568
                     * *****  ***   ********                                     

consensus_109#0      -----------------------------------
consensus_109#1      CCATAATGTCTATGTTGTGAACCAGAAGCGCATTC 603