cluster # 1130

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Anopheles gambiae
cluster # 1130 cluster # 1130 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1130#0 length = 483 sequences # 1

consensus_1130#1 length = 207 sequences # 1

consensusID : consensus_1130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CCGCAATGACCGGCGTGACGCTGGTGGTGCGTCAGCAGCGCGATCTGGCGGACCCGCTGCAGCCGGCTGTGCCGGTCCCGCACCACCGGTACCAGGAGCGCTTCCTCAGCTACGACGATCACGTCCGGTTCGGTGGGCTCGGCGGCAGCAGCCCACCCGACCTGGACCCGAACGGGCAGCAGCAGCAGCAGCAGCAGCACTACTATCACTACACGCACAGCAAGCGGCAGGCGGCACTGGAGGAAGGACCGGCCCCGTCGGCCGCCGACATCGAGGAGGCCCGGATACGGCGCTCCCTCTACGACAGCAGCTCGTACGTGCCGCGGTACATCAACGCCACCGGCTGGCTGCGGATCGAGGAGGGCAGCCCCGCCGCCGCCGCCGCCAACCCCGTCGGCAGCTCGATCGATCACGAGAAGCGCGACTACGTGCGACAGATGATGGTGCACGCCTGGAGCAACTACAAGCTGTACGCGTGGGGCA]

[+] EMBL BM585322             [CCGCAATGACCGGCGTGACGCTGGTGGTGCGTCAGCAGCGCGATCTGGCGGACCCGCTGCAGCCGGCTGTGCCGGTCCCGCACCACCGGTACCAGGAGCGCTTCCTCAGCTACGACGATCACGTCCGGTTCGGTGGGCTCGGCGGCAGCAGCCCACCCGACCTGGACCCGAACGGGCAGCAGCAGCAGCAGCAGCAGCACTACTATCACTACACGCACAGCAAGCGGCAGGCGGCACTGGAGGAAGGACCGGCCCCGTCGGCCGCCGACATCGAGGAGGCCCGGATACGGCGCTCCCTCTACGACAGCAGCTCGTACGTGCCGCGGTACATCAACGCCACCGGCTGGCTGCGGATCGAGGAGGGCAGCCCCGCCGCCGCCGCCGCCAACCCCGTCGGCAGCTCGATCGATCACGAGAAGCGCGACTACGTGCGACAGATGATGGTGCACGCCTGGAGCAACTACAAGCTGTACGCGTGGGGCA]




>consensus_1130#0
CCGCAATGACCGGCGTGACGCTGGTGGTGCGTCAGCAGCGCGATCTGGCGGACCCGCTGC
AGCCGGCTGTGCCGGTCCCGCACCACCGGTACCAGGAGCGCTTCCTCAGCTACGACGATC
ACGTCCGGTTCGGTGGGCTCGGCGGCAGCAGCCCACCCGACCTGGACCCGAACGGGCAGC
AGCAGCAGCAGCAGCAGCACTACTATCACTACACGCACAGCAAGCGGCAGGCGGCACTGG
AGGAAGGACCGGCCCCGTCGGCCGCCGACATCGAGGAGGCCCGGATACGGCGCTCCCTCT
ACGACAGCAGCTCGTACGTGCCGCGGTACATCAACGCCACCGGCTGGCTGCGGATCGAGG
AGGGCAGCCCCGCCGCCGCCGCCGCCAACCCCGTCGGCAGCTCGATCGATCACGAGAAGC
GCGACTACGTGCGACAGATGATGGTGCACGCCTGGAGCAACTACAAGCTGTACGCGTGGG
GCA

consensusID : consensus_1130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence

                              [TTGCCCCACGCGTACAGCTTGTAGTTGCTCCAGGCGTGCACCATCATCTCCTTCACTTTGTTGCGCTTCTCCCGCACGGCCCGGTCCGGGTCCTCGCCGACGGACGCGTTAAAGTGCAGCCCGGCCGGGGCGCGCGCCTTCTCGCCGCGCCTGTCCCCGCCCGCCACCTCCTGCAGCTGGCCTTCCTCCTGTTCCGGGGCGTGCTGC]

[+] EMBL AGA283569            [TTGCCCCACGCGTACAGCTTGTAGTTGCTCCAGGCGTGCACCATCATCTCCTTCACTTTGTTGCGCTTCTCCCGCACGGCCCGGTCCGGGTCCTCGCCGACGGACGCGTTAAAGTGCAGCCCGGCCGGGGCGCGCGCCTTCTCGCCGCGCCTGTCCCCGCCCGCCACCTCCTGCAGCTGGCCTTCCTCCTGTTCCGGGGCGTGCTGC]




>consensus_1130#1
TTGCCCCACGCGTACAGCTTGTAGTTGCTCCAGGCGTGCACCATCATCTCCTTCACTTTG
TTGCGCTTCTCCCGCACGGCCCGGTCCGGGTCCTCGCCGACGGACGCGTTAAAGTGCAGC
CCGGCCGGGGCGCGCGCCTTCTCGCCGCGCCTGTCCCCGCCCGCCACCTCCTGCAGCTGG
CCTTCCTCCTGTTCCGGGGCGTGCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1130#0      CCGCAATGACCGGCGTGACGCTGGTGGT-GCGTCAGCAGCGCGATCTGGCGGACCCGCTG 59
consensus_1130#1      ---TTGCCCCACGCGTACAGCTTGTAGTTGCTCCAG--GCGTGCACCATC--ATCTCCTT 53
                               *  ****   *** ** ** **  ***  *** *  *   *  * *  ** 

consensus_1130#0      CAGCCGGCTGTGCCGGTCCCGCACCACCGGTACCAGGAGCGCTTCCTCAGCTACGACGAT 119
consensus_1130#1      CACTTTGTTGCGCTTCTCCCGCACGGCCCGGTCCGGGT---CCTCGCCGACGGACGCGTT 110
                      **    * ** **   ********  ** *  ** **    * **  *  *     ** *

consensus_1130#0      CACGTCCGGTTCGGTGGGCTCGGCGGCAGCAGCCCACCCGACCTGGACCCGAACGGGCAG 179
consensus_1130#1      AAAGTGCAGCCCGGCCGGGGCGC--GCGCCTTCTCGCCGCGCCTGTCCCCGC-CCGCCAC 167
                       * ** * *  ***  **  **   **  *  * * **   ****  ****  * * ** 

consensus_1130#0      CAGCAGCAGCAGCAGCAGCACTACTATCACTACACGCACAGCAAGCGGCAGGCGGCACTG 239
consensus_1130#1      CTCCTGCAGCTG--GCCTTCCTCCTGTTCCGGGGCGTGCTGC------------------ 207
                      *  * ***** *  **    ** ** *  *    **  * **                  

consensus_1130#0      GAGGAAGGACCGGCCCCGTCGGCCGCCGACATCGAGGAGGCCCGGATACGGCGCTCCCTC 299
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      TACGACAGCAGCTCGTACGTGCCGCGGTACATCAACGCCACCGGCTGGCTGCGGATCGAG 359
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      GAGGGCAGCCCCGCCGCCGCCGCCGCCAACCCCGTCGGCAGCTCGATCGATCACGAGAAG 419
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      CGCGACTACGTGCGACAGATGATGGTGCACGCCTGGAGCAACTACAAGCTGTACGCGTGG 479
consensus_1130#1      ------------------------------------------------------------
                                                                                  

consensus_1130#0      GGCA 483
consensus_1130#1      ----