These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [TGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCAACCGCTGCCCTCGCTGCCACATACCATCACTTTCACTTTATTGCTTGTTTTCATGCTGCTTCCTTTTTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACGCTAAGCCACTAAACCAGACGTCACTCAACGTTACCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTCGTTACAAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAGTTGGGCAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATTGTACAGTTTAAGAAA] [+] EMBL BM651315 [TGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCAACCGCTGCCCTCGCTGCCACATACCATCACTTTCACTTTATTGCTTGTTTTCATGCTGCTTCCTTTTTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACGCTAAGCCACTAAACCAGACGTCACTCAACGTTACCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTCGTTACAAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAGTTGGGCAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATTGTACAGTTTAAGAAA] consensusID : consensus_1136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATACCTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTTTTTGATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTACCACTCCTATCG] [+] EMBL AGA283631 [TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATACCTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTTTTTGATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTACCACTCCTATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1136#0 ----------------------------------TGCCATCATTCAATTCACGACTTTAA 26 consensus_1136#1 TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAA 60 ************************** consensus_1136#0 TTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCAACCGCTGCCCTCGCTGCCACATAC 86 consensus_1136#1 TTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATAC 120 ************************************ *********************** consensus_1136#0 CATCACT------------------TTCACTTTATTGCTTGTTTTCATGCTGCTTCCTTT 128 consensus_1136#1 CTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTT 180 * ***** ****** ******************** **** ** consensus_1136#0 TTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGCTTCTACTA 188 consensus_1136#1 TTT--GATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTA 238 *** **** ********************* **************************** consensus_1136#0 CGCCTTCCCACGAAAACCCCTACG---CTAAGCCACTAAACCAGACGTCACTCAACGTTA 245 consensus_1136#1 CGCCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTA 298 *********************** ****************** * ************ consensus_1136#0 CCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTCGTTAC 305 consensus_1136#1 CCACTCCTATCG------------------------------------------------ 310 ************ consensus_1136#0 AAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAGTTGGG 365 consensus_1136#1 ------------------------------------------------------------ consensus_1136#0 CAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATTGTACA 425 consensus_1136#1 ------------------------------------------------------------ consensus_1136#0 GTTTAAGAAA 435 consensus_1136#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||