These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGAGCTGGAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAACCGCACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGATAAGGACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGTAACGGAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAACGAGTTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCACGCACTCAGGGCTAACGCGATGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCGATTTTAGCGAAACGCACAACCGAGCGATCGACGAGGTG] [+] EMBL BM634039 [CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGAGCTGGAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAACCGCACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGATAAGGACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGTAACGGAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAACGAGTTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCACGCACTCAGGGCTAACGCGATGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCGATTTTAGCGAAACGCACAACCGAGCGATCGACGAGGTG] consensusID : consensus_1147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCGCCCACGCGTCCGCGCCGAGAGAATGCGACGCGGGTGGCCAACATACTCGGTGTGGCTGGAGCCGATGTGCCAATAGCGGAAATTAAAAAATACCTTAAACCTCACCTGCTTGGTGTAAATGGATACGCCTTCATTGTTACCAACAATGGCTACATCCTCACGCATCCTGACTTCCGTCCAGTTTTTCAAGATATTCTCAAGCCAGCCTACAACACGGTCGACATGATCGAGGTCGAGTTGACCGATGACGACCAAGGGCCACGAGAGTTCAACAACCAACTGCTTAACATGCGTGAATCTATCATTAATCAGTCGACTGGAGCCAAGTGGATACGGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGG] [+] EMBL BM613321 [CCGCCCACGCGTCCGCGCCGAGAGAATGCGACGCGGGTGGCCAACATACTCGGTGTGGCTGGAGCCGATGTGCCAATAGCGGAAATTAAAAAATACCTTAAACCTCACCTGCTTGGTGTAAATGGATACGCCTTCATTGTTACCAACAATGGCTACATCCTCACGCATCCTGACTTCCGTCCAGTTTTTCAAGATATTCTCAAGCCAGCCTACAACACGGTCGACATGATCGAGGTCGAGTTGACCGATGACGACCAAGGGCCACGAGAGTTCAACAACCAACTGCTTAACATGCGTGAATCTATCATTAATCAGTCGACTGGAGCCAAGTGGATACGGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1147#0 CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAG 60 consensus_1147#1 CCGCCCACGCGTCCG-----------CGCCGAGAGAATGCGACGCGGGTGGCCAACATAC 49 *************** * ** *** *** * * ** ** * consensus_1147#0 CGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCC 120 consensus_1147#1 T--CGGTGTGGCTGGA-GCCGAT-------GTGCCAATAGCGGAAATTAAAAAATACCTT 99 * ** ***** ***** ** * ** * * ** * consensus_1147#0 GAGACGTACGGGCTCAATCGGCTGCAGATACGC----ACGGAGGACGAGATCCACCGTAT 176 consensus_1147#1 AAACCTCACCTGCTTGGT-GTAAATGGATACGCCTTCATTGTTACCAACAATGGCTACAT 158 * * ** *** * * ******* * * * * * * ** consensus_1147#0 TCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCC 236 consensus_1147#1 CCTCACGCATCCTGACTTC-CGTCCAGTTTTTCAA--GATATTCTCAAGCCAGCCTA-CA 214 * * ** * * * * **** ** * * * ** * * * * * consensus_1147#0 GGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGA 296 consensus_1147#1 ACACGGTCGACATGATCGAGGTCGAGTTGA----CCGATGACGACCAAGGGC-CACGAGA 269 * * * * * * * ** **** ** * * *** ** consensus_1147#0 GCTGGAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAA 356 consensus_1147#1 GTTCAA--CAACCAACTGCTTAACATGCGTGAATCT--ATCATT--AATCAGTCGACTGG 323 * * * * * * * * ** **** ** * * ** * ** * consensus_1147#0 CCGCACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGA 416 consensus_1147#1 AGCCAAGTGGATACGGGTGAAGTACCACTT-TGATGAGATGAAACGGGT--ATCGCGTAC 380 ** * * * * * * * * * ** ****** ** ** consensus_1147#0 TAAGGACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGT 476 consensus_1147#1 GAAGCGCCAGTACTACTG-GACACCGATCAAGAACA---CCCCGTTCACGCTG--GTGGT 434 *** * * ** ***** ** ** * ** * *** *** * *** consensus_1147#0 AACGGAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAA 536 consensus_1147#1 CACGTA-----TCCCGAGACGTACGGGCTCAATCGGCTG---CAGATACGC-ACGGAGGA 485 *** * * *** ** * **** * ** *** * * * * consensus_1147#0 CGAGTTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCA-CGCACTCAGGGCTAA 595 consensus_1147#1 CGAGATC---CACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAA 542 **** * ** ** ** * * * * ****** * *** * *** consensus_1147#0 CGCGATGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCG-ATTTT 654 consensus_1147#1 C-----AATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCG 597 * *** * * **** ** * * * ** * *** * consensus_1147#0 AGCGAAACGCACAACCGAGCGATCGACGAGGTG 687 consensus_1147#1 AACGAAACGTTCGCCACACCGG----------- 619 * ******* * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||