cluster # 1148

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Anopheles gambiae
cluster # 1148 cluster # 1148 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1148#0 length = 430 sequences # 1

consensus_1148#1 length = 399 sequences # 1

consensusID : consensus_1148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGTCCGATCCCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCCCGCTCCACTAGCACGCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTGCGCCGTGGCCACGATCTGCGGCGTGCGGTCCCACCCATCGGAACAGTGTACCAGCACCGGCCGACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACAGATGCTGCAGCCAAAGCGTTCGCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGCGAGGCGCAGAGCTGC]

[+] EMBL AGA283684            [GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGTCCGATCCCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCCCGCTCCACTAGCACGCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTGCGCCGTGGCCACGATCTGCGGCGTGCGGTCCCACCCATCGGAACAGTGTACCAGCACCGGCCGACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACAGATGCTGCAGCCAAAGCGTTCGCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGCGAGGCGCAGAGCTGC]




>consensus_1148#0
GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGG
GTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGTC
CGATCCCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCCCG
CTCCACTAGCACGCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTGCGC
CGTGGCCACGATCTGCGGCGTGCGGTCCCACCCATCGGAACAGTGTACCAGCACCGGCCG
ACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACAGATG
CTGCAGCCAAAGCGTTCGCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGCGAGGC
GCAGAGCTGC

consensusID : consensus_1148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [CGTTGGCAGTTCCGGAACGATGGGTTGAAAGCGGTAAGGGTGTCCTGCTTCGCTACCCAGCGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAAAGGAGGGTCGAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGCGGCGGCCGCTAAACTGTTGACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCGCAGGACTGCGCCCAGCTGCTAGTAGGTTGCGCTGGTTCTTGATGGCTTGCTCCAGCTCTTCGTCCGATTGGTTCAGCTCCTGCGTGAGGCTTGCAGCTTTTNCCTCGGGCGATT]

[-] EMBL AL932809             [CGTTGGCAGTTCCGGAACGATGGGTTGAAAGCGGTAAGGGTGTCCTGCTTCGCTACCCAGCGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAAAGGAGGGTCGAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGCGGCGGCCGCTAAACTGTTGACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCGCAGGACTGCGCCCAGCTGCTAGTAGGTTGCGCTGGTTCTTGATGGCTTGCTCCAGCTCTTCGTCCGATTGGTTCAGCTCCTGCGTGAGGCTTGCAGCTTTTNCCTCGGGCGATT]




>consensus_1148#1
CGTTGGCAGTTCCGGAACGATGGGTTGAAAGCGGTAAGGGTGTCCTGCTTCGCTACCCAG
CGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAAAGGAGGGTC
GAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGCGGCGGCCGCTAAACTGTTGA
CGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGT
TGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCGCAGGACTGCGCCCAG
CTGCTAGTAGGTTGCGCTGGTTCTTGATGGCTTGCTCCAGCTCTTCGTCCGATTGGTTCA
GCTCCTGCGTGAGGCTTGCAGCTTTTNCCTCGGGCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1148#0      GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGG 60
consensus_1148#1      -----CGTTGGCAGTTCCGGAACGATGGG--TTGAAAGCGGT--AAGGGTGTCCTGCTTC 51
                           *        *****    * * *    *  * * ***  * * *           

consensus_1148#0      GTTGTCCGGTGTCCCGGCGTCGCCGT-TCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGT 119
consensus_1148#1      GCTACCCAGCGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAA 111
                      * *  ** * ** * *  *  ** *  ****  *  **  ** *     * * ***    

consensus_1148#0      CCGATC-CCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCC 178
consensus_1148#1      AGGAGGGTCGAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGC--GGCGGCCGC 169
                        **    ** **  ***  *   **** ** *    * ** * *  **   **  *  *

consensus_1148#0      CGCTCCACTAGCAC-GCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTG 237
consensus_1148#1      TAAACTGTTGACGCCACCAATGCTTCCGTTCGGGTAGAG--ACTAGAGGAGGTTGAGGAG 227
                          *   *  * *  * ** **   ** *** *  *    **     ***   ***  *

consensus_1148#0      CGCCGTGGCCACGATCTGCGGCGTGC-GGTCCCACCCATCGGAACAGTGTACCAGCACCG 296
consensus_1148#1      -GAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGC-- 284
                       *  * *     * * * *** ** * **   * **  ***   * *     **** *  

consensus_1148#0      GCCGACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACA 356
consensus_1148#1      GCAGGAC--TGCGCCCAGCTGC-TAGTAGGTTGCGCT---GGTTCTTGATGGCTTGCTCC 338
                      ** *  *  ***** *    ** * * *     *  *   **             *  * 

consensus_1148#0      GATGCTGCAGCCAAAGCGTTC-GCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGC 415
consensus_1148#1      AGCTCTTCGTCCGATTGGTTCAGCTCCTGCG---TGAG---GCTTGCAGCTTTTNCCTCG 392
                          ** *  ** *   **** ***** **      **     *** *   *   ***  

consensus_1148#0      GAGGCGCAGAGCTGC 430
consensus_1148#1      GGCGATT-------- 399
                      *  *