These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTTGTGGCGGTGACGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGAAAGTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGATAGTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGCTCCAACAACATCCCCACACACGCACCCATGCAGCTTTAGTTACCTGCCAATCAATGGTAGATTATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATCTTGATTTGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTTGCGAATGCTTTATTGTTGTGACCACACACGTACACACC] [+] EMBL BX620530 [GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTTGTGGCGGTGACGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGAAAGTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGATAGTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGCTCCAACAACATCCCCACACACGCACCCATGCAGCTTTAGTTACCTGCCAATCAATGGTAGATTATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATCTTGATTTGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTTGCGAATGCTTTATTGTTGTGACCACACACGTACACACC] consensusID : consensus_1150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCGCTAGATCAGGAAGCGTTTGTGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTATGTGGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAAGAGACTGGATACAACACACCACTCATACACACGCGTCGGTCGGTCACAGCTTCTCCAGCCATATTGCACAGTGCGTGGAATCAAGCGCTCCATTCATCGATTCCGATGCCACCGCTTTGCAGCCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCAGCACGCGACGATGGGCGACCATACGCTAG] [+] EMBL BM647120 [CCGCTAGATCAGGAAGCGTTTGTGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGTGCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACGAAGTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTATGTGGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCGTGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGACGGCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAAGAGACTGGATACAACACACCACTCATACACACGCGTCGGTCGGTCACAGCTTCTCCAGCCATATTGCACAGTGCGTGGAATCAAGCGCTCCATTCATCGATTCCGATGCCACCGCTTTGCAGCCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCAGCACGCGACGATGGGCGACCATACGCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1150#0 -GACTAGATCAGGAAGCGTTTGTATGTGTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGT 59 consensus_1150#1 CCGCTAGATCAGGAAGCGTTTG--TGTTTGTGTGTGTTTGTGTGAAGCTAGTGCTTTAGT 58 ******************* *** ******************************** consensus_1150#0 GCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACG 119 consensus_1150#1 GCAAATAGAACCTTAGGTGCAAGAAACACAACCAAACTACACTGCAGTGGCTTATCTACG 118 ************************************************************ consensus_1150#0 AAGTACCGCGTGTTTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTTT 179 consensus_1150#1 AAGTACCGCGTGATTCAAGTGTGCGTGTGCGTGTGTGTCCATTCGTGTACGTGTACGTAT 178 ************ ********************************************* * consensus_1150#0 GTGGCGGTGA-CGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCG 238 consensus_1150#1 GTGGCGGTGAATGGTGCATCCTTTCGGCGGTCCCCGATCCCGCTTATCAGTCCGTGACCG 238 ********** ************************************************ consensus_1150#0 TGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGA 298 consensus_1150#1 TGGCAGGCAACATTGTGATTTAACAGCCCCGATACATCGATCTACAGCGTTCATCTGGGA 298 ************************************************************ consensus_1150#0 CGGCGCCTACATCTCAAACAGCGAGAGAGAGAGAGAGAGTTAAGGAACGAGGGAAACAGA 358 consensus_1150#1 CGGCGCCTACATCTCAAACAGCGAGAGAAAGAGAGAGAGAGAGAGAGAGCATAAGGGCAA 358 **************************** ********** * ** * * * consensus_1150#0 AAGTTTATTTATTCCTGTTTGCTTGTTGACCCGTGCTCGACTCGAGTCAAACTGTGCCGA 418 consensus_1150#1 GAGACTGGATACAACACACCACTCATACACACGCGTCGG--TCGGTCACAGCTTCTCCAG 416 ** * ** * ** * ** ** * * *** * ** ** consensus_1150#0 TAGTTTATTCTGGTCGTTAAAGCTGTTTATTGTATTCTATTTAGTAAGATGTAGAGTAGC 478 consensus_1150#1 CCATATTGCACAGTGCGTGGAATCAAGCGCTCCATTC-ATCGATTCCGATGCCACCGCTT 475 * * ** * * * **** ** * * **** consensus_1150#0 TCCAACAACATCCCCACAC---ACGCACCCATGCAGCTTTAGTTACCTGCCAAT-CAATG 534 consensus_1150#1 TGCAGCCGACTGTGCACGTTGGACCAGCCCGACCAGCCTGAATGGTAGGCTACCGCCGCA 535 * ** * * *** ** *** **** * * * ** * * consensus_1150#0 GTAGATTATGTGGGGTTTTTAGTAGTTACTTCACAAATATTTCAAGTGTGAGAAGGCATC 594 consensus_1150#1 GCACGCGACGATGGGCGACCATACGCTAG------------------------------- 564 * * * * *** * * ** consensus_1150#0 TTGATTTGATAGTAATTATAAATCTCTATGTCCGAGGGCCTAGCACAGTGAATCCGTTTT 654 consensus_1150#1 ------------------------------------------------------------ consensus_1150#0 GCGAATGCTTTATTGTTGTGACCACACACGTACACACC 692 consensus_1150#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||