cluster # 1179

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Anopheles gambiae
cluster # 1179 cluster # 1179 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1179#0 length = 698 sequences # 1

consensus_1179#1 length = 327 sequences # 1

consensusID : consensus_1179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAAAATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTTAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTACCGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATCAACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAGTATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTCTTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACACATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA]

[+] EMBL BX627191             [TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAAAATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTTAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTACCGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATCAACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAGTATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTCTTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACACATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA]




>consensus_1179#0
TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAA
AATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA
GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT
ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCAC
ACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTA
TGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT
TAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTAC
CGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATC
AACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAG
TATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTC
TTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACAC
ATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA

consensusID : consensus_1179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTT]

[+] EMBL BX616451             [GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTT]




>consensus_1179#1
GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCA
CCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATT
GTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAG
CACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGG
TTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATG
CGTGTAGTGTGTGTTTGGTACATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1179#0      TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAA 60
consensus_1179#1      ----------------------------GCGGCAGGAAAAGAAAATAGATTT--CAAACA 30
                                                         ***     *** * *    **   *

consensus_1179#0      AATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA 120
consensus_1179#1      AACAA-ACAAA---CAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA 86
                      ** ** * * *   **********************************************

consensus_1179#0      GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT 180
consensus_1179#1      GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT 146
                      ************************************************************

consensus_1179#0      ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCAC 240
consensus_1179#1      ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCAC 206
                      ************************************ ***********************

consensus_1179#0      ACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTA 300
consensus_1179#1      ACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTA 266
                      ******************************* ****************************

consensus_1179#0      TGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT 360
consensus_1179#1      TGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT 326
                      ****** **** ************************************************

consensus_1179#0      TAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTAC 420
consensus_1179#1      T----------------------------------------------------------- 327
                      *                                                           

consensus_1179#0      CGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATC 480
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      AACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAG 540
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      TATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTC 600
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      TTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACAC 660
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      ATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA 698
consensus_1179#1      --------------------------------------