cluster # 1190

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Anopheles gambiae
cluster # 1190 cluster # 1190 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1190#0 length = 623 sequences # 1

consensus_1190#1 length = 352 sequences # 1

consensusID : consensus_1190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACCATGTGCTCGAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAACAGGTCCATCAGCTCAGTCAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCGCAGCTCTTGGACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACACACCGTGGGCAGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAGATGGCAAAGATGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTCAGATGGAGGCCTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCCGATCCGGTCTTGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGCTTGGGATCCGCCTCGACGGCCCGCGCCTTGAAG]

[+] EMBL CNS09LDX             [AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACCATGTGCTCGAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAACAGGTCCATCAGCTCAGTCAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCGCAGCTCTTGGACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACACACCGTGGGCAGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAGATGGCAAAGATGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTCAGATGGAGGCCTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCCGATCCGGTCTTGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGCTTGGGATCCGCCTCGACGGCCCGCGCCTTGAAG]




>consensus_1190#0
AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCA
CGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACG
TTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACCATGTGCTC
GAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAACAGGTCCATCAGCTCAGT
CAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCGCAGCTCTTG
GACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACACACCGTGGGC
AGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAGATGGCAAAGA
TGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTCAGATGGAGGC
CTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCCGATCCGGTCT
TGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGCTTGGGATCCG
CCTCGACGGCCCGCGCCTTGAAG

consensusID : consensus_1190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCCCCTTTTTAATAGCGTAGGTACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAGAAGAGCGACGTGGTGAACGTTGATGCTGAGGAATGGATCGATGTGGGGGAAGAGATGGCGGCTCAGTTGGAGTCGCCACTGGCGGTGCAAGTTGTGTTGGATACACATCTGGGAGCA]

[+] EMBL AGA283835            [TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCCCCTTTTTAATAGCGTAGGTACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAGAAGAGCGACGTGGTGAACGTTGATGCTGAGGAATGGATCGATGTGGGGGAAGAGATGGCGGCTCAGTTGGAGTCGCCACTGGCGGTGCAAGTTGTGTTGGATACACATCTGGGAGCA]




>consensus_1190#1
TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACG
GTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGC
TGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCC
CCTTTTTAATAGCGTAGGTACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAGAAGAG
CGACGTGGTGAACGTTGATGCTGAGGAATGGATCGATGTGGGGGAAGAGATGGCGGCTCA
GTTGGAGTCGCCACTGGCGGTGCAAGTTGTGTTGGATACACATCTGGGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1190#0      --------AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACG 52
consensus_1190#1      TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACG 60
                              ***  ***********************************************

consensus_1190#0      GTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGC 112
consensus_1190#1      GTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGC 120
                      ************************************************************

consensus_1190#0      TGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACC 172
consensus_1190#1      TGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCC 180
                      ******************************************************    **

consensus_1190#0      ATGTGCTCGAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAAC-AGGTCCAT 231
consensus_1190#1      CCTTTTT---AATAGCGTAGGT--ACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAG 235
                         *  *   * ***   * **    *  * *   ** ****  * **  * **  * * 

consensus_1190#0      CAGCTCAGTCAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCG 291
consensus_1190#1      AAGAGCGACGTGGTGAACGTTGATGCTGA--GGAATGGATCGATGTGGGGGAAGAGATGG 293
                       **  *     *   *         *  *  * **  ** *       ** *   *   *

consensus_1190#0      CAGCTCTTGGACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACAC 351
consensus_1190#1      CGGCTC--AGTTGGAGTCGCCACTGGCGGTG---CAAGTTGTGTTG-------GATACAC 341
                      * ****   *   * ** *  *  *  *  *     * **  ** *       * *****

consensus_1190#0      ACC-GTGGGCAGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAG 410
consensus_1190#1      ATCTGGGAGCA------------------------------------------------- 352
                      * * * * ***                                                 

consensus_1190#0      ATGGCAAAGATGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTC 470
consensus_1190#1      ------------------------------------------------------------
                                                                                  

consensus_1190#0      AGATGGAGGCCTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCC 530
consensus_1190#1      ------------------------------------------------------------
                                                                                  

consensus_1190#0      GATCCGGTCTTGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGC 590
consensus_1190#1      ------------------------------------------------------------
                                                                                  

consensus_1190#0      TTGGGATCCGCCTCGACGGCCCGCGCCTTGAAG 623
consensus_1190#1      ---------------------------------