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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 901 fasta sequence
[CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCAACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGCTCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTTGGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGCCTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAAAGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTTANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGGCACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTCCGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAAC]
[+] EMBL BX468592 [CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCAACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGCTCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTTGGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGCCTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAAAGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTTANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGGCACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTCCGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAAC]
consensusID : consensus_1205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGAGCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCACACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGAGTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGGCGCAACTGATGGTCATTTTTGCCCT]
[+] EMBL BX616911 [GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGAGCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCACACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGAGTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGGCGCAACTGATGGTCATTTTTGCCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1205#0 CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCA 60
consensus_1205#1 ------------------------------------------------------------
consensus_1205#0 ACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACA 120
consensus_1205#1 ----------------------GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACA 38
**************** ******* ************
consensus_1205#0 TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGC 180
consensus_1205#1 TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGC 98
******************************************** **** **********
consensus_1205#0 TCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTT 240
consensus_1205#1 TCGGGTTT-CACAACAACCCGGA-GCAGC-ACGAGG-CGCTGCTGGTGC--TGCTGGAGC 152
******** ***** ******** ***** ****** **** * ** *** *
consensus_1205#0 GGAAGCAGGGAGGCTTGGGGAA--GAATTTTGG-GTTGTTACCCGGGGANGGGAATTGCC 297
consensus_1205#1 AGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGG 212
* *** ***** **** * * *** ** * * * ******* * **
consensus_1205#0 GGCCTAA--GGTTGTTC--CCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCG 353
consensus_1205#1 AGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCC-----GAGAGGGAAAGTA 267
* * ** ** * ** **** **** ** *** * *** ***
consensus_1205#0 GAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGC 413
consensus_1205#1 CATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGC 327
* * * *** * * ** *** ** * * * ** * * **
consensus_1205#0 CCCGGAAAGA-AGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTT 472
consensus_1205#1 GTGGAAAAAACACTCGAGCGCTTTCCTGA--AGCACACCGAGCTGG--GCGAATGGATGC 383
* *** * * ** * * * ** **** * * * * *
consensus_1205#0 AAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCA 532
consensus_1205#1 AGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACG 443
* * * * * * * * ** * * *** * * * *
consensus_1205#0 NTTTACTTAN-TGGGACNGAAGCGGT--TGGAAAGAAANACAGCTCC--GAAGCCGCTTT 587
consensus_1205#1 GTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGG 503
* * * * ** * *** * * * ** * ** ** * ** ****
consensus_1205#0 TCCCTTGGAAAGGCA-CAACCGGAGGCTTGGGCGAC-ACTGGGATGCCAGAAATCTGGGT 645
consensus_1205#1 AACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCG-----TGGAG 558
* * * * *** * ** *** ** * *** * *** * ***
consensus_1205#0 CCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAA 705
consensus_1205#1 TCAGCGAGCGA-ACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGG----TCGAG 613
* * ** * * ** * * ** * * * ** ** *** * **
consensus_1205#0 GGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAAC--AGGGGCAGAGCTATTACN 763
consensus_1205#1 CTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTG 673
* * * *** *** ***** * * * ** *
consensus_1205#0 CCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCC 823
consensus_1205#1 CT-AGACATTCAGTGAGC---TTGTGAATCGAGTGAAT-CCAAAGCGACAGA--GTCTCG 726
* *** * * ** * * ** ****** ** ** *** ** *
consensus_1205#0 AGCATCGGTCNACAGTCCGGA---AGCTTCGATGCAGGCCTGACC-TGGAGCGG-CGCCG 878
consensus_1205#1 GTAGTTTGTTGGACGTTCGAATAGAGCATC-ATGAACATTTCATCGTGGAATGGGCGCAA 785
* ** ** ** * *** ** *** * * * * **** ** ***
consensus_1205#0 GTGCGAGGTACAGCGGGGCGAAC 901
consensus_1205#1 CTGATGGTCATTTTTGCCCT--- 805
** * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||