These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [CATGTTCCGGCTGTACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAGGAAGTTCTCCAACACCACGTACCTTTTCGACAATCAAAACATGAAGGATCTGTACCTGGCCATGAGCCCGGTCGACCACCAGCAGTACCCGTGCGACAACCGAAACTACAGCTGGCGTCTGTACTTCGATGTTGCCGTGCCCGGGCTGAAGAAATACTTCTTCAAGGAGGACCTCAACAATGTCAAGCGAGCCCGCCAGGCGATGCGCAAGAAGGAGCTGATCGTTAACACTACGCTGTTTCTAATCGTCGGTCTGATGCTGCTCCAGCTCTACTACCTACTGCGCTAGGCAACGCACGCGCGTTTGCAACGCTTCGGTCCAAGTAGGCCGGTTTCGGACGATCTATGCAAATGATGTTCCGTGGTATTACTCCCCCTCCCCAAGAGAAAATGAATCCCTCCCCAAAACCCCACAGGTGCATAGATCATAGCGCCGTGATGCGTTCGGGTCCATCGCCTGCTTCAGGGCCAACTGCTTGTGGTGCAAAGGCCCACACACATACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGANGGCAGGGATGGTCGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTA] [+] EMBL BX624717 [CATGTTCCGGCTGTACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAGGAAGTTCTCCAACACCACGTACCTTTTCGACAATCAAAACATGAAGGATCTGTACCTGGCCATGAGCCCGGTCGACCACCAGCAGTACCCGTGCGACAACCGAAACTACAGCTGGCGTCTGTACTTCGATGTTGCCGTGCCCGGGCTGAAGAAATACTTCTTCAAGGAGGACCTCAACAATGTCAAGCGAGCCCGCCAGGCGATGCGCAAGAAGGAGCTGATCGTTAACACTACGCTGTTTCTAATCGTCGGTCTGATGCTGCTCCAGCTCTACTACCTACTGCGCTAGGCAACGCACGCGCGTTTGCAACGCTTCGGTCCAAGTAGGCCGGTTTCGGACGATCTATGCAAATGATGTTCCGTGGTATTACTCCCCCTCCCCAAGAGAAAATGAATCCCTCCCCAAAACCCCACAGGTGCATAGATCATAGCGCCGTGATGCGTTCGGGTCCATCGCCTGCTTCAGGGCCAACTGCTTGTGGTGCAAAGGCCCACACACATACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGANGGCAGGGATGGTCGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTA] consensusID : consensus_121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [AACCGATCACCTTCGCCTCGAGCAACTAGATCATGTTCCGGCTATACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAAGAAGTTCTCCAACACCACATACACACACACACACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGAGGGCAGGGATGGTGGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTAGGTTTTCGTAAATAAGGTTTTAGGGCCTAGGGAATGCCGACAGGCGGCCTGCCTGTTGGGTGGCGCTTTAGAGGTGGTGTGCTAGGTTAGACATTTCTGTATTTTTTTTTTTTTTGGTAACCGTTTCGTCCGACCCTGTGGTTTCGACACATTCTAACGATCGATGCGGTGGGTCGTTTTCTTTGATTTGTTTTCTGAGTATTTCTATTTTAACAAGCACCAACAATTCCCGAAATTCAACGAATGGCGGCGCGGCGGTAGTGCTAGGAAGGCTGCAGCCTCGA] [+] EMBL BX612636 [AACCGATCACCTTCGCCTCGAGCAACTAGATCATGTTCCGGCTATACTCGCTGGTGCTGCACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTCTAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAAGAAGTTCTCCAACACCACATACACACACACACACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAAGAGGGCAGGGATGGTGGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTAGGTTTTCGTAAATAAGGTTTTAGGGCCTAGGGAATGCCGACAGGCGGCCTGCCTGTTGGGTGGCGCTTTAGAGGTGGTGTGCTAGGTTAGACATTTCTGTATTTTTTTTTTTTTTGGTAACCGTTTCGTCCGACCCTGTGGTTTCGACACATTCTAACGATCGATGCGGTGGGTCGTTTTCTTTGATTTGTTTTCTGAGTATTTCTATTTTAACAAGCACCAACAATTCCCGAAATTCAACGAATGGCGGCGCGGCGGTAGTGCTAGGAAGGCTGCAGCCTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_121#0 -------------------------------CATGTTCCGGCTGTACTCGCTGGTGCTGC 29 consensus_121#1 AACCGATCACCTTCGCCTCGAGCAACTAGATCATGTTCCGGCTATACTCGCTGGTGCTGC 60 ************ **************** consensus_121#0 ACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTC 89 consensus_121#1 ACTATCTGCCCGCCTACATCATGGACATGGCCTTGAGGTTTCGGGGTGAAAAGCCCCGTC 120 ************************************************************ consensus_121#0 TAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAGGAAGTTCTCCAACA 149 consensus_121#1 TAGTCGATACGTACGTCAAGATCGATAAGGTCGTTGCCTCGGTGAAGAAGTTCTCCAACA 180 ********************************************* ************** consensus_121#0 CCACGTACCTTTTCGACAATCAAAACATGAAGGATCTGTACCTGGCCATGAGCCCGGTCG 209 consensus_121#1 CCACATACACACACACACACACACACACA---CACACGAAC---GCCAC--ACATGGTTG 232 **** *** * * * *** * * ** **** * *** * consensus_121#0 ACCACCAGCAGTACCCGTGCGACAACCGAAACTACAGCTGGCGTCTGTACTTCGATGTTG 269 consensus_121#1 ATCG--ATTGGGAC---TAAGAGGGCAGGGATGGTGG--GGCGCATATCATCAGGCAGAG 285 * * * * ** * ** * * * * **** * * * * * consensus_121#0 CCGTGCCCGGGCTGAAGAAATACTTCTTCAAGGAGGACCTCAACAATGT-CAAGCGAGCC 328 consensus_121#1 TTGTGAAGTGAATCAGACAATAAAACATAATGGGATGCGTTAGGTTTTCGTAAATAAGGT 345 *** * * * **** * * * ** * * * * ** ** consensus_121#0 CGCCAGGCGATGCGCAAGAAGGAGCTGATCGTTAACACTACGCTGTTTCTAATCGTCGGT 388 consensus_121#1 TTTAGGGC------CTAGGGAATGCCGACAGGCGGC-CTGC-CTGTTGGGTGGCGCTTTA 397 *** * ** ** ** * * ** * ***** ** consensus_121#0 CTGATGCTGCTCCAGCTCTACTACCTACTGCGCTAGGCAACGCACGCGCGTTTGCAACGC 448 consensus_121#1 GAGGTGGTGTGCTAGGTTAGACATTT-CTGTATT------TTTTTTTTTTTTGGTAACCG 450 * ** ** * ** * * * *** * ** * *** consensus_121#0 TTCGGTCCAAGTAGGCCGGTTTCGGACGATCTATGCAAATGATGTTCCGTGGTATTA-CT 507 consensus_121#1 TTTCGTCCGACCCTGT-GGTTTCGACACATTCTAACGATCGATGCGGTGGGTCGTTTTCT 509 ** **** * * ******* ** * * **** * * ** ** consensus_121#0 CCCCCTCCCCAAGAGAAAATGAATCCCTCCCCAAAACCCCACAGGTGCATAGAT-CATAG 566 consensus_121#1 TTGATTTGTTTTCTGAGTATTTCTATTTTAACAAGCACCAACAATTCCCGAAATTCAACG 569 * ** ** * * *** ** *** * * * ** ** * consensus_121#0 CGCCGTGATGCGTTCG-GGTCCATCGCCTGCTTCAGGGCCAACTGCTTGTGGTGCAAAGG 625 consensus_121#1 AATGGCGGCGCGGCGGTAGTGCTAGGAAGGCTGCAGCCTCGA------------------ 611 * * *** * ** * * *** *** * * consensus_121#0 CCCACACACATACACACACACACACACGAACGCCACACATGGTTGATCGATTGGGACTAA 685 consensus_121#1 ------------------------------------------------------------ consensus_121#0 GANGGCAGGGATGGTCGGGCGCATATCATCAGGCAGAGTTGTGAAGTGAATCAGACAATA 745 consensus_121#1 ------------------------------------------------------------ consensus_121#0 AAACATAATGGGATGCGTTA 765 consensus_121#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||