cluster # 1222

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Anopheles gambiae
cluster # 1222 cluster # 1222 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1222#0 length = 651 sequences # 1

consensus_1222#1 length = 473 sequences # 1

consensusID : consensus_1222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCGCTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGCGGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTCGGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTCATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGCCAGAGTGCGTAAACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTTTTGTTCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG]

[+] EMBL BM581711             [CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCGCTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGCGGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTCGGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTCATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGCCAGAGTGCGTAAACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTTTTGTTCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG]




>consensus_1222#0
CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCG
CTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGC
GGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGC
TTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAAC
CTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAG
AAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTAC
AATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTC
GGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTC
ATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGC
CAGAGTGCGTAAACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTTTTGT
TCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG

consensusID : consensus_1222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [CCGGTCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGACGTCGCTGGTACCGAAAACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGCATATCCAAATCGGTTACCTTCCGCAACACCAAGTCACTGATGGAGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGGCGGCAGCGAGTACTACAGCATTCTGCGCACCTCGCAGGAGATACCGTACGATAGTGCTATCTTCTTGGCCACCAGCAGGGCGACTACCGACGCGCAGCTTTCCCGCATGACCGCACTCACCCTGCTCAAGAAGCGGATTCGGCTGTACGTGATCTGGTTCGGCGAGGAGATCC]

[+] EMBL BM643984             [CCGGTCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGACGTCGCTGGTACCGAAAACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGCATATCCAAATCGGTTACCTTCCGCAACACCAAGTCACTGATGGAGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGGCGGCAGCGAGTACTACAGCATTCTGCGCACCTCGCAGGAGATACCGTACGATAGTGCTATCTTCTTGGCCACCAGCAGGGCGACTACCGACGCGCAGCTTTCCCGCATGACCGCACTCACCCTGCTCAAGAAGCGGATTCGGCTGTACGTGATCTGGTTCGGCGAGGAGATCC]




>consensus_1222#1
CCGGTCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCT
GCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACAC
GTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGACGTCGCTGGTACCGAAAAC
CCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGCATATCCAAATCGGTTACCTT
CCGCAACACCAAGTCACTGATGGAGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGG
CGGCAGCGAGTACTACAGCATTCTGCGCACCTCGCAGGAGATACCGTACGATAGTGCTAT
CTTCTTGGCCACCAGCAGGGCGACTACCGACGCGCAGCTTTCCCGCATGACCGCACTCAC
CCTGCTCAAGAAGCGGATTCGGCTGTACGTGATCTGGTTCGGCGAGGAGATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1222#0      CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCG 60
consensus_1222#1      ------------------------------------------------------------
                                                                                  

consensus_1222#0      CTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGC 120
consensus_1222#1      ------------------------------------------------------------
                                                                                  

consensus_1222#0      GGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGC 180
consensus_1222#1      --------------------------------CCGGTCCACACACCCGACCGGCGGTGGC 28
                                                       * * ***********************

consensus_1222#0      TTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAAC 240
consensus_1222#1      TTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAAC 88
                      ************************************************************

consensus_1222#0      CTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAG 300
consensus_1222#1      CTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAG 148
                      ************************************************************

consensus_1222#0      AAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTAC 360
consensus_1222#1      AAGGTGCTAGAGACGTCGCTGGTACCGAAAACCCCGCTCGATGCAATCCTGATGCGCTAC 208
                      ************ **************** ******************************

consensus_1222#0      AATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTC 420
consensus_1222#1      AATGCCAGCGGCA--TATCCAAATCGGTTACCTTCCGCAACACCAAGT---CACTGATGG 263
                      *********** *  ****    *      *   * *   ** ** **   * *** *  

consensus_1222#0      GGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTC 480
consensus_1222#1      AGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGGCGGCAGCGAGTACTACAGCATTC 323
                       *   ***    ***  *  *   *   *** *     *  *   * * *   *  * **

consensus_1222#0      ATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGC 540
consensus_1222#1      TGCGCACCTCGCAGGAGATACCGTACGATAGTGCTATCTTCTTGGCCACCAGCAGGGCGA 383
                          *  *  *       *    * *  * ***     ** ***  *      **  ** 

consensus_1222#0      CAGAGTGCGTA-AACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTT--T 597
consensus_1222#1      CTACCGACGCGCAGCTTTCCCGCATGACCGCACTCACCCTGCTCAAGAAGCGGATTCGGC 443
                      *      **   * **     *  **    *      ** * * * *  * *  **    

consensus_1222#0      TGTTCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG 651
consensus_1222#1      TGTACGTGATCTGGTTCGGCGAGG---AGATCC--------------------- 473
                      *** * *  *  **  * *  *     * ***