cluster # 1226

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Anopheles gambiae
cluster # 1226 cluster # 1226 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1226#0 length = 650 sequences # 1

consensus_1226#1 length = 282 sequences # 1

consensusID : consensus_1226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [GGCANGACCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGATCATTAACGTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAAGTTATAATTTAAAAACCAATAAGATTATAGTTTNCCNNCTTCTTTCTATAGCAATTATAAGCTGCTGAAGGATGTGTATATTTCAATTATATTTCTCTNGACAGCAAGCTAACATGTGTTTCTCTGTTCGCAACGCATTTNCTATGTTATNTATTTCTGCTCCTCTGCTTCTGTTACAGGGCTGCTATCTCTTTTTATTACAATCTTTCTTTCTTTCCTAATACTGATTTGACATTTGTAGCACCAACAATTGCAAATTGTATTTGACGCTGTATTAACTTTTCCGTTTTGCCTTACTTTATTTACAAATGTTTTATCGAAGCAACAAATCGTTACGAAAGCAATTTACGCGTAGCTGAAGCAGCTTGTTTCGTTGTANTCTATTCCTNGTTCTNGTTGAAGTAATCTATGATTTTATATGATTTGTTCACTTATCTGATCTGCGCAGCTNAATAAAGAAGGATAACTCCTTTCACCCCAAAACGGCACAAAAAACCACGTTAACCATGGGGAGAAACAAAACATACTGAAAGCAGTAAAAGGTCCCGT]

[+] EMBL AL932660             [GGCANGACCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGATCATTAACGTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAAGTTATAATTTAAAAACCAATAAGATTATAGTTTNCCNNCTTCTTTCTATAGCAATTATAAGCTGCTGAAGGATGTGTATATTTCAATTATATTTCTCTNGACAGCAAGCTAACATGTGTTTCTCTGTTCGCAACGCATTTNCTATGTTATNTATTTCTGCTCCTCTGCTTCTGTTACAGGGCTGCTATCTCTTTTTATTACAATCTTTCTTTCTTTCCTAATACTGATTTGACATTTGTAGCACCAACAATTGCAAATTGTATTTGACGCTGTATTAACTTTTCCGTTTTGCCTTACTTTATTTACAAATGTTTTATCGAAGCAACAAATCGTTACGAAAGCAATTTACGCGTAGCTGAAGCAGCTTGTTTCGTTGTANTCTATTCCTNGTTCTNGTTGAAGTAATCTATGATTTTATATGATTTGTTCACTTATCTGATCTGCGCAGCTNAATAAAGAAGGATAACTCCTTTCACCCCAAAACGGCACAAAAAACCACGTTAACCATGGGGAGAAACAAAACATACTGAAAGCAGTAAAAGGTCCCGT]




>consensus_1226#0
GGCANGACCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGATCATTAAC
GTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAAGTTATAATTTAAAAACCAA
TAAGATTATAGTTTNCCNNCTTCTTTCTATAGCAATTATAAGCTGCTGAAGGATGTGTAT
ATTTCAATTATATTTCTCTNGACAGCAAGCTAACATGTGTTTCTCTGTTCGCAACGCATT
TNCTATGTTATNTATTTCTGCTCCTCTGCTTCTGTTACAGGGCTGCTATCTCTTTTTATT
ACAATCTTTCTTTCTTTCCTAATACTGATTTGACATTTGTAGCACCAACAATTGCAAATT
GTATTTGACGCTGTATTAACTTTTCCGTTTTGCCTTACTTTATTTACAAATGTTTTATCG
AAGCAACAAATCGTTACGAAAGCAATTTACGCGTAGCTGAAGCAGCTTGTTTCGTTGTAN
TCTATTCCTNGTTCTNGTTGAAGTAATCTATGATTTTATATGATTTGTTCACTTATCTGA
TCTGCGCAGCTNAATAAAGAAGGATAACTCCTTTCACCCCAAAACGGCACAAAAAACCAC
GTTAACCATGGGGAGAAACAAAACATACTGAAAGCAGTAAAAGGTCCCGT

consensusID : consensus_1226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [GTGTAGAAATTGGAAATGTTTGTGCAATGTTTGGCTATGCAAAATTATTTAAAAAAATTAAGGGTAAACAGGACCCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGATCATTAAGTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAATTTGTAATTTATGAGCCAATAAGATTATAGTTTTTTTTTCTTTCTATAGAATTATAAGCTGATGAAGGATGTACTATATTTCAATTATAGGTTCATGACAGCAAGCTAAAAAAAA]

[-] EMBL AGA284023            [GTGTAGAAATTGGAAATGTTTGTGCAATGTTTGGCTATGCAAAATTATTTAAAAAAATTAAGGGTAAACAGGACCCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGATCATTAAGTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAATTTGTAATTTATGAGCCAATAAGATTATAGTTTTTTTTTCTTTCTATAGAATTATAAGCTGATGAAGGATGTACTATATTTCAATTATAGGTTCATGACAGCAAGCTAAAAAAAA]




>consensus_1226#1
GTGTAGAAATTGGAAATGTTTGTGCAATGTTTGGCTATGCAAAATTATTTAAAAAAATTA
AGGGTAAACAGGACCCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGAT
CATTAAGTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAATTTGTAATTTATG
AGCCAATAAGATTATAGTTTTTTTTTCTTTCTATAGAATTATAAGCTGATGAAGGATGTA
CTATATTTCAATTATAGGTTCATGACAGCAAGCTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1226#0      ------------------------------------------------------------
consensus_1226#1      GTGTAGAAATTGGAAATGTTTGTGCAATGTTTGGCTATGCAAAATTATTTAAAAAAATTA 60
                                                                                  

consensus_1226#0      ------GGCANGACC-AACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGAT 53
consensus_1226#1      AGGGTAAACAGGACCCAACACGGACGGCGTCACGGAAAGTGGTAGTGAAGAAAGGGTGAT 120
                              ** **** ********************************************

consensus_1226#0      CATTAACGTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAAGTTATAATTTAA 113
consensus_1226#1      CATTAA-GTGTAGTGCAGGGGAAACAGGCAGGATCTGATTTAAGGAAATTTGTAATTTAT 179
                      ****** ***************************************** ** ******* 

consensus_1226#0      AAACCAATAAGATTATAGTTTNCCNNCTTCTTTCTATAGCAATTATAAGCTGCTGAAGGA 173
consensus_1226#1      GAGCCAATAAGATTATAGTTTT--TTTTTCTTTCTATAG-AATTATAAGCTGATGAAGGA 236
                       * ******************      ************ ************ *******

consensus_1226#0      TGTG-TATATTTCAATTATATTTCTCTNGACAGCAAGCTAACATGTGTTTCTCTGTTCGC 232
consensus_1226#1      TGTACTATATTTCAATTATAGGT-TCATGACAGCAAGCTAAAAAAAA------------- 282
                      ***  ***************  * **  ************* *                 

consensus_1226#0      AACGCATTTNCTATGTTATNTATTTCTGCTCCTCTGCTTCTGTTACAGGGCTGCTATCTC 292
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      TTTTTATTACAATCTTTCTTTCTTTCCTAATACTGATTTGACATTTGTAGCACCAACAAT 352
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      TGCAAATTGTATTTGACGCTGTATTAACTTTTCCGTTTTGCCTTACTTTATTTACAAATG 412
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      TTTTATCGAAGCAACAAATCGTTACGAAAGCAATTTACGCGTAGCTGAAGCAGCTTGTTT 472
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      CGTTGTANTCTATTCCTNGTTCTNGTTGAAGTAATCTATGATTTTATATGATTTGTTCAC 532
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      TTATCTGATCTGCGCAGCTNAATAAAGAAGGATAACTCCTTTCACCCCAAAACGGCACAA 592
consensus_1226#1      ------------------------------------------------------------
                                                                                  

consensus_1226#0      AAAACCACGTTAACCATGGGGAGAAACAAAACATACTGAAAGCAGTAAAAGGTCCCGT 650
consensus_1226#1      ----------------------------------------------------------