cluster # 1239

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Anopheles gambiae
cluster # 1239 cluster # 1239 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1239#0 length = 358 sequences # 1

consensus_1239#1 length = 339 sequences # 1

consensusID : consensus_1239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGACGGAGNACGATCCAGACCAGGCACCGCCGAAAGACNAANAGGCCTTTGGCGCGATCTCGTGGCCTATTGGATACTGGGACTGTGCAACAACTACGGCTATGTGGTGATGCTGACAGCTGCGCACGCATATTCTAAAAGTAGCTGGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACTGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACNGTCCGTGCAACAAGCTCTCGACTGGTGNCAATACCTCCTGGCCGACATCCCTGCCCGGGCACCTGGGCCGGTC]

[+] EMBL BX619216             [TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGACGGAGNACGATCCAGACCAGGCACCGCCGAAAGACNAANAGGCCTTTGGCGCGATCTCGTGGCCTATTGGATACTGGGACTGTGCAACAACTACGGCTATGTGGTGATGCTGACAGCTGCGCACGCATATTCTAAAAGTAGCTGGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACTGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACNGTCCGTGCAACAAGCTCTCGACTGGTGNCAATACCTCCTGGCCGACATCCCTGCCCGGGCACCTGGGCCGGTC]




>consensus_1239#0
TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGACGGAGNACGATCCAGACCAGGCA
CCGCCGAAAGACNAANAGGCCTTTGGCGCGATCTCGTGGCCTATTGGATACTGGGACTGT
GCAACAACTACGGCTATGTGGTGATGCTGACAGCTGCGCACGCATATTCTAAAAGTAGCT
GGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCCGTTGGACGGCTACGACGTGGCTAA
CACAACTGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACNGTCCGTGCAACAAGC
TCTCGACTGGTGNCAATACCTCCTGGCCGACATCCCTGCCCGGGCACCTGGGCCGGTC

consensusID : consensus_1239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACGGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCCTGGCCGACATCCTGCCGGCACTGGCCGTCAAATCGATTGCATCGTTCCTTCCGCTGGCGAAACATGTTCGAATTTTCCTATGTGTTGCGGCAGCCGCCGCCGGCTTTCTGCTGACGGCCTTTGCCACCGTCGAATGGGTGCTGTTCGTCGGCGTTATAGCGACCTCGTTTTCATCCGGGCTCGGCGAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG]

[+] EMBL BX616567             [AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACGGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCCTGGCCGACATCCTGCCGGCACTGGCCGTCAAATCGATTGCATCGTTCCTTCCGCTGGCGAAACATGTTCGAATTTTCCTATGTGTTGCGGCAGCCGCCGCCGGCTTTCTGCTGACGGCCTTTGCCACCGTCGAATGGGTGCTGTTCGTCGGCGTTATAGCGACCTCGTTTTCATCCGGGCTCGGCGAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG]




>consensus_1239#1
AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACGGCCCGGGCCGATGACGTT
ACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCCTGGCC
GACATCCTGCCGGCACTGGCCGTCAAATCGATTGCATCGTTCCTTCCGCTGGCGAAACAT
GTTCGAATTTTCCTATGTGTTGCGGCAGCCGCCGCCGGCTTTCTGCTGACGGCCTTTGCC
ACCGTCGAATGGGTGCTGTTCGTCGGCGTTATAGCGACCTCGTTTTCATCCGGGCTCGGC
GAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1239#0      ----------------------TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGAC 38
consensus_1239#1      AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACA---CAACGGCCCGGGCCGATGAC 57
                                             ** ** **  ***    *  ***  ** ***  ****

consensus_1239#0      GGAGNACGATCCAG-ACCAGGCACCGCCGAAAGACNAANAGGCCTTTGGCGCGAT-CTCG 96
consensus_1239#1      G--TTACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCC 115
                      *    *** *   * ** ******  ***    ** *     *    ** ** ** *** 

consensus_1239#0      TGGCCTATTGGATACTGGGACTGTGCAACAACTACGGCTATGTGGTGATGCTGACAGCTG 156
consensus_1239#1      TGGCCGACATCCTGCCGGCACTGGCCGTCAAAT-CGATTGCATCGT---TCCTTCCGCTG 171
                      ***** *     * * ** ****  *  *** * **  *   * **    *   * ****

consensus_1239#0      CGCACGCATATTCTAAAAGTAGCTGGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCC 216
consensus_1239#1      GCGAAACATGTTC--GAATTTTCCTATGTGTTGCGGCAGC--CGCCGCCGGCTTTCTGCT 227
                         *  *** ***   ** *  *    * *  * * * *   ****    *      ** 

consensus_1239#0      GTTGGACGGCTACGACGTGGCTAACACAACTGCCCGGGCCGATGACGTTACG-TTTGGGT 275
consensus_1239#1      GACGGCCTTTGCCACCGTCGA-ATGGGTGCTGTTC--GTCGGCGTTATAGCGACCTCGTT 284
                      *  ** *     *  *** *  *      ***  *  * **  *   *  **   * * *

consensus_1239#0      ACGAGGCACNGTCCGTGCAACAAGCTCTCGACTGGTGNCAATACCTCCTGGCCGACATCC 335
consensus_1239#1      TTCATCCGGGCTCGGCGAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG----- 339
                         *  *    ** * *   * * **  *    *    *** *        *        

consensus_1239#0      CTGCCCGGGCACCTGGGCCGGTC 358
consensus_1239#1      -----------------------