cluster # 1258

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1258 cluster # 1258 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1258#0 length = 693 sequences # 1

consensus_1258#1 length = 655 sequences # 1

consensusID : consensus_1258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTACTACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAACGTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA]

[+] EMBL BM612050             [CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTACTACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAACGTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA]




>consensus_1258#0
CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTAC
TACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAAC
GTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCA
TTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAG
TTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAG
GTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCG
CTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAA
ATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCA
CTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAA
GAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAG
CAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTT
TGGCGTTTGACAGGTGTCTTGATATCTGTCAAA

consensusID : consensus_1258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA]

[+] EMBL BM613280             [CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA]




>consensus_1258#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGA
CTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAG
CTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTT
ACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAG
AAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTA
CATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCA
CGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTC
AAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCA
TATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAG
GTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGG
TGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1258#0      CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTAC 60
consensus_1258#1      ------------------------------------------------------------
                                                                                  

consensus_1258#0      TACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAAC 120
consensus_1258#1      ------------------------------------------------------------
                                                                                  

consensus_1258#0      GTGTCTTTGAACGTTTTTCCTATCCTCGACATAC-TACGAAGCCACTTAGTAGGGTTGCC 179
consensus_1258#1      --------------CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCC 46
                                        **   * **  *  **       ***** *************

consensus_1258#0      ATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATA 239
consensus_1258#1      ATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATA 106
                      ************************************************************

consensus_1258#0      GTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTA 299
consensus_1258#1      GTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTA 166
                      ************************************************************

consensus_1258#0      GGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGC 359
consensus_1258#1      GGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGC 226
                      ************************************************************

consensus_1258#0      GCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGA 419
consensus_1258#1      GCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGA 286
                      ************************************************************

consensus_1258#0      AATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTC 479
consensus_1258#1      AATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTC 346
                      ************************************************************

consensus_1258#0      ACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCA 539
consensus_1258#1      ACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCA 406
                      ************************************************************

consensus_1258#0      AGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGA 599
consensus_1258#1      AGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGA 466
                      ************************************************************

consensus_1258#0      GCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTT 659
consensus_1258#1      GCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTT 526
                      ************************************************************

consensus_1258#0      TTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA-------------------------- 693
consensus_1258#1      TTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAA 586
                      **********************************                          

consensus_1258#0      ------------------------------------------------------------
consensus_1258#1      ATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACA 646
                                                                                  

consensus_1258#0      ---------
consensus_1258#1      GCAGCGATA 655